Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032822.1-P | Field mustard | nucleus | 98.9 | 98.9 |
| CDX84928 | Canola | nucleus | 96.16 | 96.43 |
| CDY15713 | Canola | nucleus | 80.82 | 75.64 |
| CDY03913 | Canola | nucleus | 76.16 | 74.93 |
| AT1G27360.1 | Thale cress | nucleus | 75.34 | 69.97 |
| CDY27612 | Canola | nucleus | 63.01 | 69.91 |
| CDY67700 | Canola | nucleus | 62.19 | 65.61 |
| CDX84927 | Canola | nucleus | 65.75 | 65.4 |
| CDY03914 | Canola | nucleus | 65.75 | 64.52 |
| CDY11816 | Canola | nucleus | 64.38 | 64.38 |
| CDY15712 | Canola | nucleus | 65.48 | 63.9 |
| Os02t0139400-01 | Rice | nucleus | 29.86 | 38.65 |
| CDY17204 | Canola | nucleus | 13.7 | 35.21 |
| CDY37684 | Canola | nucleus | 13.42 | 34.75 |
| CDY57212 | Canola | nucleus | 13.42 | 34.75 |
| CDY27935 | Canola | nucleus | 13.97 | 34.69 |
| KRG97402 | Soybean | nucleus | 38.36 | 32.33 |
| Os02t0174100-02 | Rice | nucleus | 21.92 | 31.87 |
| KRH31506 | Soybean | nucleus | 38.36 | 31.6 |
| CDY32959 | Canola | nucleus | 33.7 | 31.54 |
| CDY50515 | Canola | nucleus | 13.42 | 31.21 |
| CDY24113 | Canola | nucleus | 13.7 | 31.06 |
| CDY43604 | Canola | nucleus | 32.33 | 30.65 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 29.04 | 30.29 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 34.25 | 30.05 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 37.53 | 29.91 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 38.08 | 29.89 |
| CDX97645 | Canola | nucleus | 14.52 | 29.61 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 34.79 | 29.0 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 25.75 | 28.66 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 25.48 | 28.62 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 25.48 | 28.53 |
| CDX98540 | Canola | nucleus | 13.97 | 28.49 |
| CDY20128 | Canola | nucleus | 13.7 | 28.41 |
| CDY32310 | Canola | nucleus | 13.7 | 28.41 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 33.42 | 28.18 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 36.16 | 28.14 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 25.21 | 28.13 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 34.79 | 27.97 |
| CDY61210 | Canola | nucleus | 13.7 | 27.93 |
| CDY25876 | Canola | nucleus | 13.42 | 27.84 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 26.3 | 27.75 |
| Zm00001d015410_P002 | Maize | nucleus | 25.21 | 27.71 |
| EES04609 | Sorghum | nucleus | 25.48 | 27.6 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 35.34 | 27.27 |
| Zm00001d053775_P001 | Maize | nucleus | 24.66 | 27.19 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 35.07 | 27.06 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 35.07 | 26.95 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 34.25 | 26.94 |
| CDX79544 | Canola | nucleus | 13.7 | 26.74 |
| EES04495 | Sorghum | nucleus | 35.07 | 26.67 |
| Os06t0703500-02 | Rice | nucleus | 33.97 | 26.11 |
| Zm00001d014698_P001 | Maize | nucleus | 31.23 | 25.97 |
| OQU77017 | Sorghum | nucleus | 31.23 | 25.91 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 35.89 | 25.84 |
| Os06t0663500-00 | Rice | nucleus | 24.11 | 25.66 |
| GSMUA_Achr10P... | Banana | nucleus | 33.97 | 25.46 |
| GSMUA_Achr10P... | Banana | nucleus | 35.07 | 25.4 |
| CDY47812 | Canola | nucleus | 35.62 | 25.19 |
| CDY22356 | Canola | nucleus | 35.07 | 24.66 |
| CDX95958 | Canola | nucleus | 20.0 | 24.41 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 35.07 | 24.11 |
| Zm00001d053890_P003 | Maize | nucleus | 31.51 | 23.86 |
| CDY15132 | Canola | nucleus | 15.07 | 23.61 |
| CDX90071 | Canola | nucleus | 20.0 | 23.4 |
| CDY69014 | Canola | nucleus | 20.0 | 22.88 |
| CDY50300 | Canola | nucleus | 20.55 | 22.87 |
| CDY61750 | Canola | nucleus | 19.18 | 22.73 |
| CDX96251 | Canola | nucleus | 20.27 | 22.56 |
| CDX81606 | Canola | nucleus | 20.55 | 22.52 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 32.05 | 22.2 |
| CDX98259 | Canola | nucleus | 19.45 | 21.85 |
| CDX79888 | Canola | nucleus | 21.92 | 21.74 |
| CDY06881 | Canola | nucleus | 21.37 | 21.49 |
| CDY45826 | Canola | nucleus | 20.0 | 21.41 |
| CDY53504 | Canola | nucleus | 21.64 | 21.35 |
| CDY47656 | Canola | nucleus | 18.63 | 20.99 |
| CDY14818 | Canola | nucleus | 21.1 | 20.98 |
| CDY38043 | Canola | nucleus | 19.18 | 20.9 |
| CDX71667 | Canola | nucleus | 20.55 | 20.89 |
| CDX84872 | Canola | nucleus | 19.45 | 20.82 |
| CDY34028 | Canola | nucleus | 19.73 | 20.69 |
| CDX67715 | Canola | nucleus | 17.81 | 20.57 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.1 | 6.9 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078GQJ0 | UniProt:A0A078GQJ0 | EnsemblPlants:CDY27611 | ProteinID:CDY27611 |
| ProteinID:CDY27611.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00038356001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF30 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EDE111 | SEG:seg | : | : |
Description
BnaA09g27960DBnaA09g27960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQJ0]
Coordinates
chrLK032207:+:292314..293941
Molecular Weight (calculated)
40658.5 Da
IEP (calculated)
8.872
GRAVY (calculated)
-0.690
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMRSPLL WDWENLIISN PSNDKKQLTT TTSEWEIEKG EGIESLFPCL DGLQRVSNDS TTSFWHTTSV SKSSQSTSTN SSSPIIKQTK LASENSPGDS
101: CSNIDFVQVK TSTAAESDLC LKLGKRTYSG RDVSPVSTKL LAPCVVTRKK SKSCGQSSMQ VPRCQVDGCD LDLSSAKDYH RKHRVCETHS KCPKVTVSGV
201: ERRFCQQCSR LHAVSEFDEK KRSCRIRLSH HNARRRKSQG VFPFNPERVY DQRQHTNVVW GTTCDTKPTQ RESGFTLSFQ RGNGSKEEQL FASSNHSLSA
301: YQTSGGFSAG KNKFQLGVGE YSEVLHQSQD FHRAFSLLST SSGPLVHPHA QQPLSLLFSF DGVPK
101: CSNIDFVQVK TSTAAESDLC LKLGKRTYSG RDVSPVSTKL LAPCVVTRKK SKSCGQSSMQ VPRCQVDGCD LDLSSAKDYH RKHRVCETHS KCPKVTVSGV
201: ERRFCQQCSR LHAVSEFDEK KRSCRIRLSH HNARRRKSQG VFPFNPERVY DQRQHTNVVW GTTCDTKPTQ RESGFTLSFQ RGNGSKEEQL FASSNHSLSA
301: YQTSGGFSAG KNKFQLGVGE YSEVLHQSQD FHRAFSLLST SSGPLVHPHA QQPLSLLFSF DGVPK
001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK
Arabidopsis Description
SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.