Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016891.1-P | Field mustard | nucleus | 98.62 | 98.62 |
| CDY14818 | Canola | nucleus | 96.69 | 95.64 |
| CDX79888 | Canola | nucleus | 88.43 | 87.23 |
| CDY53504 | Canola | nucleus | 88.43 | 86.76 |
| AT2G42200.1 | Thale cress | nucleus | 85.95 | 83.2 |
| CDX98259 | Canola | nucleus | 47.66 | 53.23 |
| CDX67715 | Canola | nucleus | 46.01 | 52.85 |
| CDY61750 | Canola | nucleus | 42.42 | 50.0 |
| CDY47656 | Canola | nucleus | 44.08 | 49.38 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 47.11 | 45.12 |
| KRH67040 | Soybean | nucleus | 43.25 | 42.78 |
| KRG95361 | Soybean | nucleus | 41.32 | 41.78 |
| KRH38141 | Soybean | nucleus, plastid | 40.5 | 39.41 |
| KRH71914 | Soybean | nucleus, plastid | 38.57 | 39.11 |
| CDY27935 | Canola | nucleus | 15.7 | 38.78 |
| CDY17204 | Canola | nucleus | 15.15 | 38.73 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 30.03 | 38.25 |
| CDY37684 | Canola | nucleus | 14.6 | 37.59 |
| PGSC0003DMT400029751 | Potato | nucleus | 38.29 | 37.37 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 34.99 | 37.24 |
| Solyc10g078700.1.1 | Tomato | nucleus | 37.74 | 36.83 |
| CDY57212 | Canola | nucleus | 14.05 | 36.17 |
| CDY50515 | Canola | nucleus | 15.43 | 35.67 |
| CDY24113 | Canola | nucleus | 15.43 | 34.78 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 32.23 | 34.11 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 31.96 | 33.72 |
| CDY25876 | Canola | nucleus | 16.25 | 33.52 |
| CDY61210 | Canola | nucleus | 15.7 | 31.84 |
| CDX98540 | Canola | nucleus | 15.7 | 31.84 |
| CDY20128 | Canola | nucleus | 15.43 | 31.82 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 31.13 | 31.65 |
| CDX97645 | Canola | nucleus | 15.43 | 31.28 |
| CDY32310 | Canola | nucleus | 15.15 | 31.25 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 29.48 | 30.92 |
| Zm00001d020941_P001 | Maize | nucleus | 31.68 | 30.42 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 33.88 | 29.93 |
| Zm00001d006028_P001 | Maize | nucleus | 31.41 | 29.77 |
| EER99092 | Sorghum | nucleus | 31.13 | 29.12 |
| CDX79544 | Canola | nucleus | 14.88 | 28.88 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 30.85 | 28.87 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 19.56 | 28.86 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 28.93 | 28.46 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 30.58 | 28.03 |
| Os09t0491532-01 | Rice | nucleus | 24.79 | 27.86 |
| CDX95958 | Canola | nucleus | 22.86 | 27.76 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 29.48 | 27.72 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 29.2 | 27.53 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 29.2 | 27.46 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 30.85 | 27.45 |
| TraesCS5A01G265900.2 | Wheat | nucleus | 30.85 | 27.25 |
| EES14266 | Sorghum | nucleus | 30.3 | 26.89 |
| Zm00001d031451_P001 | Maize | nucleus | 29.48 | 26.55 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 30.3 | 26.44 |
| CDY69014 | Canola | nucleus | 23.14 | 26.33 |
| Zm00001d052890_P001 | Maize | nucleus | 29.48 | 26.23 |
| Os08t0509600-01 | Rice | nucleus | 29.48 | 25.66 |
| CDY50300 | Canola | nucleus | 22.59 | 25.0 |
| CDX96251 | Canola | nucleus | 22.59 | 25.0 |
| CDX81606 | Canola | nucleus | 22.86 | 24.92 |
| CDY45826 | Canola | nucleus | 22.59 | 24.05 |
| CDX84872 | Canola | nucleus | 22.59 | 24.05 |
| CDX71667 | Canola | nucleus | 22.86 | 23.12 |
| CDY34028 | Canola | nucleus | 21.76 | 22.7 |
| CDY43604 | Canola | nucleus | 23.97 | 22.6 |
| CDY67700 | Canola | nucleus | 21.21 | 22.25 |
| CDY27612 | Canola | nucleus | 20.11 | 22.19 |
| CDY03913 | Canola | nucleus | 22.59 | 22.1 |
| CDX84927 | Canola | nucleus | 22.04 | 21.8 |
| CDY32959 | Canola | nucleus | 23.42 | 21.79 |
| CDX84928 | Canola | nucleus | 21.49 | 21.43 |
| CDY11816 | Canola | nucleus | 21.49 | 21.37 |
| CDY27611 | Canola | nucleus | 21.49 | 21.37 |
| CDY15713 | Canola | nucleus | 22.59 | 21.03 |
| CDY03914 | Canola | nucleus | 21.21 | 20.7 |
| CDY38043 | Canola | nucleus | 19.01 | 20.6 |
| CDY15712 | Canola | nucleus | 21.21 | 20.59 |
| CDX90071 | Canola | nucleus | 17.63 | 20.51 |
| CDY15132 | Canola | nucleus | 12.12 | 18.88 |
| CDY47812 | Canola | nucleus | 23.97 | 16.86 |
| CDY22356 | Canola | nucleus | 23.69 | 16.57 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.38 | 8.62 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078F0E4 | EnsemblPlants:CDY06881 | ProteinID:CDY06881 | ProteinID:CDY06881.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00123166001 | InterPro:IPR004333 | InterPro:IPR036893 |
| PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_sf |
| SUPFAM:SSF103612 | UniParc:UPI0004EF409E | SEG:seg | : | : | : |
Description
BnaA04g24340D
Coordinates
chrLK031974:-:5922..8312
Molecular Weight (calculated)
39706.9 Da
IEP (calculated)
8.029
GRAVY (calculated)
-0.829
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMGSNSGQG LGPGQADSGG SSNESSSFSG GLMFGQRIYF EDGGGGSSSS GGSNRRVRGG GSGQSSQIPR CQVEGCGVDL TNAKGYYLRH RVCGMHSKTP
101: RVIVAGIEQR FCQQCSRFHQ LQEFDLEKRS CRRRLAGHNE RRRKPQPASL SVLSSRYGRI APSLYGNAES TMNGSFLGSQ DMSWTSSRTL DTRVMRRPVA
201: APSWQINPMD VFSQGSVSGG GGISFSSPEI MDTKPESYKG IGGDSNCALS LLSNPHQPAD NNNTWRTSSG FGPMTVTMAQ PPPAPSQHQY LNPPWVFKDD
301: DNNCPNDMSP VLNLARFTET DTTMGEFELS DHHHPQHQNR RQYMEDDNTR AYDSSSQHNN WSL
101: RVIVAGIEQR FCQQCSRFHQ LQEFDLEKRS CRRRLAGHNE RRRKPQPASL SVLSSRYGRI APSLYGNAES TMNGSFLGSQ DMSWTSSRTL DTRVMRRPVA
201: APSWQINPMD VFSQGSVSGG GGISFSSPEI MDTKPESYKG IGGDSNCALS LLSNPHQPAD NNNTWRTSSG FGPMTVTMAQ PPPAPSQHQY LNPPWVFKDD
301: DNNCPNDMSP VLNLARFTET DTTMGEFELS DHHHPQHQNR RQYMEDDNTR AYDSSSQHNN WSL
001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
Arabidopsis Description
SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.