Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27612 | Canola | nucleus | 82.56 | 92.1 |
| CDY67700 | Canola | nucleus | 71.39 | 75.72 |
| CDY11816 | Canola | nucleus | 72.21 | 72.6 |
| CDY03914 | Canola | nucleus | 73.3 | 72.31 |
| CDY15712 | Canola | nucleus | 73.3 | 71.93 |
| AT1G27360.1 | Thale cress | nucleus | 70.84 | 66.16 |
| CDY27611 | Canola | nucleus | 65.4 | 65.75 |
| CDX84928 | Canola | nucleus | 64.31 | 64.84 |
| CDY15713 | Canola | nucleus | 68.66 | 64.62 |
| CDY03913 | Canola | nucleus | 63.49 | 62.8 |
| Os02t0139400-01 | Rice | nucleus | 29.16 | 37.94 |
| CDY17204 | Canola | nucleus | 14.44 | 37.32 |
| CDY27935 | Canola | nucleus | 14.71 | 36.73 |
| CDY37684 | Canola | nucleus | 13.35 | 34.75 |
| CDY57212 | Canola | nucleus | 13.35 | 34.75 |
| Os02t0174100-02 | Rice | nucleus | 22.62 | 33.07 |
| CDY50515 | Canola | nucleus | 13.9 | 32.48 |
| CDY24113 | Canola | nucleus | 14.17 | 32.3 |
| CDY32959 | Canola | nucleus | 34.06 | 32.05 |
| CDY43604 | Canola | nucleus | 32.97 | 31.43 |
| KRG97402 | Soybean | nucleus | 36.51 | 30.95 |
| KRH31506 | Soybean | nucleus | 36.24 | 30.02 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 27.52 | 29.19 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 32.97 | 29.09 |
| CDY61210 | Canola | nucleus | 14.17 | 29.05 |
| CDX97645 | Canola | nucleus | 14.17 | 29.05 |
| CDY20128 | Canola | nucleus | 13.9 | 28.98 |
| CDY32310 | Canola | nucleus | 13.9 | 28.98 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 35.69 | 28.6 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 36.24 | 28.6 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 27.25 | 28.57 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 34.88 | 28.19 |
| Zm00001d015410_P002 | Maize | nucleus | 25.34 | 28.01 |
| CDX98540 | Canola | nucleus | 13.62 | 27.93 |
| CDY25876 | Canola | nucleus | 13.35 | 27.84 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 24.8 | 27.74 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 24.52 | 27.69 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 24.52 | 27.52 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 35.15 | 27.51 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 32.43 | 27.48 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 32.7 | 27.4 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 24.25 | 27.3 |
| EES04609 | Sorghum | nucleus | 25.07 | 27.3 |
| Zm00001d053775_P001 | Maize | nucleus | 24.25 | 26.89 |
| CDX79544 | Canola | nucleus | 13.62 | 26.74 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 34.33 | 26.64 |
| CDY47812 | Canola | nucleus | 37.33 | 26.55 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 33.52 | 26.51 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 34.06 | 26.43 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 33.79 | 26.11 |
| GSMUA_Achr10P... | Banana | nucleus | 34.06 | 25.67 |
| CDY22356 | Canola | nucleus | 35.97 | 25.43 |
| Os06t0663500-00 | Rice | nucleus | 23.71 | 25.36 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 34.6 | 25.05 |
| EES04495 | Sorghum | nucleus | 32.43 | 24.79 |
| Os06t0703500-02 | Rice | nucleus | 31.88 | 24.63 |
| CDX95958 | Canola | nucleus | 19.89 | 24.41 |
| GSMUA_Achr10P... | Banana | nucleus | 33.52 | 24.4 |
| OQU77017 | Sorghum | nucleus | 29.16 | 24.32 |
| Zm00001d014698_P001 | Maize | nucleus | 28.61 | 23.92 |
| CDY61750 | Canola | nucleus | 19.35 | 23.05 |
| CDY69014 | Canola | nucleus | 19.62 | 22.57 |
| CDY50300 | Canola | nucleus | 20.16 | 22.56 |
| CDX90071 | Canola | nucleus | 19.07 | 22.44 |
| CDY15132 | Canola | nucleus | 14.17 | 22.32 |
| CDX96251 | Canola | nucleus | 19.89 | 22.26 |
| CDX81606 | Canola | nucleus | 20.16 | 22.22 |
| CDY47656 | Canola | nucleus | 19.62 | 22.22 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 31.88 | 22.2 |
| Zm00001d053890_P003 | Maize | nucleus | 29.16 | 22.2 |
| CDY06881 | Canola | nucleus | 21.8 | 22.04 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 31.88 | 22.03 |
| CDX98259 | Canola | nucleus | 19.35 | 21.85 |
| CDY14818 | Canola | nucleus | 21.8 | 21.8 |
| CDX79888 | Canola | nucleus | 21.8 | 21.74 |
| CDX71667 | Canola | nucleus | 21.25 | 21.73 |
| CDY45826 | Canola | nucleus | 20.16 | 21.7 |
| CDY53504 | Canola | nucleus | 21.53 | 21.35 |
| CDX67715 | Canola | nucleus | 18.26 | 21.2 |
| CDX84872 | Canola | nucleus | 19.62 | 21.11 |
| CDY38043 | Canola | nucleus | 19.07 | 20.9 |
| CDY34028 | Canola | nucleus | 19.62 | 20.69 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.82 | 5.17 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078D6W4 | EnsemblPlants:CDX84927 | ProteinID:CDX84927 | ProteinID:CDX84927.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00142279001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EEA3BF | SEG:seg | : | : | : | : |
Description
BnaC05g21280D
Coordinates
chrLK031839:+:303669..305239
Molecular Weight (calculated)
40814.4 Da
IEP (calculated)
8.546
GRAVY (calculated)
-0.808
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMTSPLW DWDHFLMSNP SKTEDDKRQP STEWGIEKGE GIESIFPSFE RVSSGSTTGF STNSSSPIFR HAKLASESSP GDSCSNIDFV QVKTSTAESD
101: LCLKLGKQTY CEDVWGRSNN EVSAVSLKLL APSVVARKKS KPYGQSSMQV PRCQVDGCEL DLSSAKDYHR KHRVCENHSK CPKVTVGGLE RRFCQQCSRL
201: HAVSEFDEKK RSCRKRLSHH NARRRKPQRD CNGRQHPNML WNGLSLNTSP VEKYIWSPSY DTKPTQMESG FTLSFQRGRG PEEHLYAGSS RSFSTFQTSG
301: GFSAGRSNSQ LPGKAGVGEY SGGLHESQDI YSVLSLLSTS SDSHGTKHNP TVEPQPTTHG TFPTHFI
101: LCLKLGKQTY CEDVWGRSNN EVSAVSLKLL APSVVARKKS KPYGQSSMQV PRCQVDGCEL DLSSAKDYHR KHRVCENHSK CPKVTVGGLE RRFCQQCSRL
201: HAVSEFDEKK RSCRKRLSHH NARRRKPQRD CNGRQHPNML WNGLSLNTSP VEKYIWSPSY DTKPTQMESG FTLSFQRGRG PEEHLYAGSS RSFSTFQTSG
301: GFSAGRSNSQ LPGKAGVGEY SGGLHESQDI YSVLSLLSTS SDSHGTKHNP TVEPQPTTHG TFPTHFI
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.