Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr1P21300_001 | |
| GSMUA_Achr8P18250_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P14160_001 | Banana | nucleus | 55.79 | 64.19 |
| GSMUA_Achr10P... | Banana | nucleus | 60.34 | 63.1 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 50.09 | 56.9 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 41.18 | 47.8 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 30.74 | 46.29 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 37.95 | 46.19 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 38.14 | 45.89 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 39.28 | 44.14 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 28.46 | 43.35 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 34.16 | 43.27 |
| GSMUA_Achr10P... | Banana | nucleus | 37.95 | 41.07 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 35.1 | 39.78 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 34.91 | 38.57 |
| Bra033671.1-P | Field mustard | nucleus | 25.24 | 36.74 |
| CDY43604 | Canola | nucleus | 26.38 | 36.1 |
| KRG97402 | Soybean | nucleus | 29.6 | 36.03 |
| Solyc04g045560.2.1 | Tomato | nucleus | 23.72 | 35.71 |
| PGSC0003DMT400084734 | Potato | nucleus | 31.5 | 35.7 |
| Solyc05g015510.2.1 | Tomato | nucleus | 31.12 | 35.42 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 10.25 | 35.29 |
| Bra027478.1-P | Field mustard | nucleus | 25.81 | 34.87 |
| CDY32959 | Canola | nucleus | 25.81 | 34.87 |
| KRH31506 | Soybean | nucleus | 29.03 | 34.54 |
| PGSC0003DMT400068752 | Potato | nucleus | 24.48 | 33.51 |
| AT5G43270.1 | Thale cress | nucleus | 26.57 | 33.41 |
| GSMUA_Achr4P03880_001 | Banana | nucleus | 17.46 | 32.28 |
| CDX84928 | Canola | nucleus | 22.2 | 32.14 |
| CDY03913 | Canola | nucleus | 22.58 | 32.08 |
| CDY27611 | Canola | nucleus | 22.2 | 32.05 |
| CDX84927 | Canola | nucleus | 22.2 | 31.88 |
| CDY15712 | Canola | nucleus | 22.58 | 31.82 |
| Bra032822.1-P | Field mustard | nucleus | 22.01 | 31.78 |
| Bra030041.1-P | Field mustard | nucleus | 22.39 | 31.55 |
| CDY67700 | Canola | nucleus | 20.68 | 31.5 |
| CDY03914 | Canola | nucleus | 22.2 | 31.45 |
| CDY11816 | Canola | nucleus | 21.63 | 31.23 |
| Bra030040.1-P | Field mustard | nucleus | 22.58 | 30.51 |
| CDY15713 | Canola | nucleus | 22.58 | 30.51 |
| Bra032823.1-P | Field mustard | nucleus | 18.98 | 30.49 |
| GSMUA_Achr1P08440_001 | Banana | nucleus | 10.82 | 30.48 |
| GSMUA_Achr4P23650_001 | Banana | nucleus | 10.82 | 30.48 |
| CDY27612 | Canola | nucleus | 18.98 | 30.4 |
| Bra010949.1-P | Field mustard | nucleus | 21.06 | 30.33 |
| AT1G27370.1 | Thale cress | nucleus | 22.77 | 30.3 |
| AT1G27360.1 | Thale cress | nucleus | 22.2 | 29.77 |
| CDY22356 | Canola | nucleus | 28.65 | 29.09 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 14.04 | 29.02 |
| CDY47812 | Canola | nucleus | 28.27 | 28.88 |
| GSMUA_Achr2P03070_001 | Banana | nucleus | 11.2 | 27.44 |
| GSMUA_Achr8P25550_001 | Banana | nucleus | 17.65 | 27.03 |
| GSMUA_Achr7P20510_001 | Banana | nucleus | 17.27 | 26.69 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 13.66 | 26.47 |
| GSMUA_Achr2P11940_001 | Banana | nucleus | 15.94 | 26.42 |
| GSMUA_Achr10P... | Banana | nucleus | 11.2 | 25.88 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 15.18 | 25.08 |
| GSMUA_Achr9P22260_001 | Banana | nucleus | 16.32 | 25.07 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 12.9 | 24.82 |
| GSMUA_Achr9P27660_001 | Banana | nucleus | 17.27 | 24.66 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 15.94 | 24.28 |
| GSMUA_Achr4P24610_001 | Banana | nucleus | 14.8 | 23.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.51 | 23.39 |
| GSMUA_Achr4P01450_001 | Banana | nucleus | 15.75 | 23.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.37 | 22.95 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 16.89 | 22.65 |
| GSMUA_Achr6P22280_001 | Banana | nucleus | 17.65 | 22.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.99 | 22.57 |
| GSMUA_Achr9P20220_001 | Banana | nucleus | 10.44 | 22.36 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 14.61 | 21.75 |
| GSMUA_Achr5P13440_001 | Banana | mitochondrion, nucleus | 11.95 | 21.65 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 14.99 | 21.41 |
| GSMUA_Achr3P11170_001 | Banana | nucleus | 15.75 | 21.39 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 14.61 | 21.39 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 14.99 | 21.18 |
| GSMUA_Achr4P26940_001 | Banana | nucleus | 13.85 | 21.04 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 14.61 | 20.16 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 15.37 | 19.61 |
| GSMUA_Achr11P... | Banana | nucleus | 14.99 | 19.04 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr8G23820_001 |
| EnsemblPlants:GSMUA_Achr8P23820_001 | EnsemblPlants:GSMUA_Achr8T23820_001 | InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0TT35 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF65 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI000296777E | SEG:seg | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G23820_001]
Coordinates
chr8:+:28173114..28179339
Molecular Weight (calculated)
57780.5 Da
IEP (calculated)
9.251
GRAVY (calculated)
-0.539
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MYFVVRILFG NFSVAETSVF GCCHGQKALI WWDCGQKRGK INKNQAVHTS PLISRFWFVS RCTSAATDGE VERPCVKGNS SGTFSSSTPS TLDHPRVGIR
101: SGARICNGSV CSSSGGASSV LELGNRSSKS SISASIDSLS ETGKRKSQFN FDSTERAPYN LNKNIFARVE GSGTSPASVT AGYSREPLTG LKLGRTSFED
201: GGAGNNIENL SSSASITSSI ALVKKSRVSQ QTFQNFYCQV EGCNIDLTTA KDYHRKHRVC VNHSKSPKVI VAGQERRFCQ QCSRFHGLSE FDQNKRSCRR
301: RLSDHNVRRR KPQPMTISFS SPRISSSDHD DGHQMNLVFG RAPPCNVPAT VSSPWDDLGS FKLIQPKESW TKSNKAGGST GLLQFSSTCQ THDITPFHHD
401: LDPLSPLKGI TTEVLNHNLE ASVFASNLDV PPDLHSALSL LSTNSWNPVN PGTSSTKYVN TKNAFTTHPE VNMIDATTGL LQDEQPLAQP LTTTQPFHLQ
501: NDNGQFQEFQ QLKAPFRASS FDSTRRH
101: SGARICNGSV CSSSGGASSV LELGNRSSKS SISASIDSLS ETGKRKSQFN FDSTERAPYN LNKNIFARVE GSGTSPASVT AGYSREPLTG LKLGRTSFED
201: GGAGNNIENL SSSASITSSI ALVKKSRVSQ QTFQNFYCQV EGCNIDLTTA KDYHRKHRVC VNHSKSPKVI VAGQERRFCQ QCSRFHGLSE FDQNKRSCRR
301: RLSDHNVRRR KPQPMTISFS SPRISSSDHD DGHQMNLVFG RAPPCNVPAT VSSPWDDLGS FKLIQPKESW TKSNKAGGST GLLQFSSTCQ THDITPFHHD
401: LDPLSPLKGI TTEVLNHNLE ASVFASNLDV PPDLHSALSL LSTNSWNPVN PGTSSTKYVN TKNAFTTHPE VNMIDATTGL LQDEQPLAQP LTTTQPFHLQ
501: NDNGQFQEFQ QLKAPFRASS FDSTRRH
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.