Factsheet for PGSC0003DMT400084734

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015510.2.1	Tomato	nucleus	95.27	95.68
PGSC0003DMT400068752	Potato	nucleus	43.01	51.95
VIT_01s0010g03710.t01	Wine grape	nucleus	53.12	51.78
Os02t0139400-01	Rice	nucleus	28.82	47.52
Bra033671.1-P	Field mustard	nucleus	34.41	44.2
Bra027478.1-P	Field mustard	nucleus	35.27	42.05
CDY32959	Canola	nucleus	35.27	42.05
CDY43604	Canola	nucleus	34.41	41.56
PGSC0003DMT400076399	Potato	nucleus	12.04	41.18
GSMUA_Achr9P23140_001	Banana	nucleus	36.77	41.11
AT5G43270.1	Thale cress	nucleus	36.77	40.81
GSMUA_Achr4P05720_001	Banana	nucleus	30.32	40.75
GSMUA_Achr4P12470_001	Banana	nucleus	30.54	40.57
GSMUA_Achr9P14160_001	Banana	nucleus	38.92	39.52
GSMUA_Achr6P36010_001	Banana	nucleus	36.99	39.27
Os02t0174100-02	Rice	nucleus	21.08	39.04
OQU77017	Sorghum	nucleus	36.77	38.86
PGSC0003DMT400058753	Potato	nucleus	11.18	38.52
GSMUA_Achr3P27750_001	Banana	nucleus	38.49	38.17
Zm00001d014698_P001	Maize	nucleus	35.7	37.81
GSMUA_Achr5P22630_001	Banana	nucleus	36.56	37.44
GSMUA_Achr5P21990_001	Banana	nucleus	34.84	37.41
TraesCS6B01G183400.1	Wheat	nucleus	26.24	37.31
GSMUA_Achr3P05360_001	Banana	nucleus	37.2	37.28
TraesCS6A01G155300.1	Wheat	nucleus	26.02	36.89
HORVU6Hr1G031450.6	Barley	nucleus	25.81	36.81
Os06t0703500-02	Rice	nucleus	37.42	36.63
TraesCS6D01G145200.1	Wheat	nucleus	25.59	36.62
TraesCS6D01G098500.1	Wheat	nucleus	37.2	36.58
TraesCS6A01G110100.2	Wheat	nucleus	36.99	36.21
TraesCS6B01G138400.1	Wheat	nucleus	36.77	36.15
EES04609	Sorghum	nucleus	26.02	35.91
Zm00001d053775_P001	Maize	nucleus	25.38	35.65
EES04495	Sorghum	nucleus	36.77	35.62
PGSC0003DMT400085174	Potato	nucleus	10.11	35.34
HORVU6Hr1G019700.3	Barley	nucleus	38.49	35.31
PGSC0003DMT400082789	Potato	nucleus	12.47	35.15
GSMUA_Achr10P...	Banana	nucleus	36.77	35.11
CDY22356	Canola	nucleus	39.14	35.07
Zm00001d015410_P002	Maize	nucleus	24.95	34.94
GSMUA_Achr10P...	Banana	nucleus	37.85	34.92
CDY47812	Canola	nucleus	38.28	34.5
Os06t0663500-00	Rice	nucleus	23.44	31.78
GSMUA_Achr8P23820_001	Banana	nucleus	35.7	31.5
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	35.48	31.07
Zm00001d053890_P003	Maize	nucleus	30.54	29.46
PGSC0003DMT400029751	Potato	nucleus	21.51	26.88
PGSC0003DMT400074976	Potato	nucleus	15.91	25.26
PGSC0003DMT400066955	Potato	nucleus	15.48	23.84
PGSC0003DMT400056374	Potato	nucleus	16.13	23.51
PGSC0003DMT400059813	Potato	nucleus	17.85	18.2
PGSC0003DMT400072745	Potato	nucleus	20.0	16.67
PGSC0003DMT400063046	Potato	nucleus	15.05	13.57

Protein Annotations

EntrezGene:102588591	MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	UniProt:M1D7X7	PFAM:PF03110	EnsemblPlantsGene:PGSC0003DMG400034310	PGSC:PGSC0003DMG400034310
EnsemblPlants:PGSC0003DMT400084734	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF30	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI0002969995	RefSeq:XP_006352180.1	RefSeq:XP_006352181.1	RefSeq:XP_006352182.1	RefSeq:XP_015166302.1
SEG:seg	:	:	:	:	:

Description

LIGULELESS1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400034310]

Coordinates

chr5:-:14099707..14103368

Molecular Weight (calculated)

50575.6 Da

IEP (calculated)

8.879

GRAVY (calculated)

-0.668

Length

465 amino acids

Sequence
(BLAST)

001: MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGTGGYGSDV KCGSSIKSSI SASTDSSPKE GFKASNFAFE AFNTSPEDPS
101: KKLESSKAEV SRNSPPMEAS VGSVEPVIGL KLGKRTCETF GGGSSAKVSS FPPNPTSSAA TKKAKSSSQN APIPHCQVEG CNLDLSSAKE YYRKHRVCDS
201: HSKSPKVIVA GVARRFCQQC SRFHSVSEFD EKKRSCRRRL SDHNARRRKP HQETIQFNSA RLSSLFYDSR QPMNLVLNQA QLIHSRAAAN STWESTQDSK
301: FSITRGFTPK PERTSSTNGK SLLEGIQFSR AVGAQSNASS LLLPSKGTTA EVFNRGAKES MFNMVTGPEF PRALSLLSTN SWGSSEPETV SLNHANQTSM
401: PEQMMQAIPQ GVPHMSSQYW QQAGQHSSDT RYHTLAANSN SGGSFQEMGV FKAPFDTDFY LNALN

Best Arabidopsis Sequence Match ( AT5G43270.2 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.