Factsheet for PGSC0003DMT400059813

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g038520.1.1	Tomato	nucleus	92.11	93.96
VIT_17s0000g05020.t01	Wine grape	nucleus	56.14	45.96
KRH54739	Soybean	nucleus	37.06	44.47
PGSC0003DMT400076399	Potato	nucleus	13.16	44.12
PGSC0003DMT400058753	Potato	nucleus	12.5	42.22
KRH56776	Soybean	nucleus	50.22	41.71
KRH63174	Soybean	nucleus	50.88	41.13
KRH03167	Soybean	nucleus	48.68	40.81
PGSC0003DMT400085174	Potato	nucleus	11.62	39.85
PGSC0003DMT400082789	Potato	nucleus	13.82	38.18
CDX95958	Canola	nucleus	21.05	32.11
Bra004363.1-P	Field mustard	nucleus	20.83	31.56
CDY69014	Canola	nucleus	21.93	31.35
Bra038324.1-P	Field mustard	nucleus	20.39	28.53
PGSC0003DMT400056374	Potato	nucleus	19.96	28.53
CDY50300	Canola	nucleus	20.18	28.05
CDX96251	Canola	nucleus	19.96	27.74
CDX81606	Canola	nucleus	20.18	27.63
PGSC0003DMT400066955	Potato	nucleus	17.98	27.15
AT1G69170.1	Thale cress	nucleus	23.46	26.42
PGSC0003DMT400074976	Potato	nucleus	16.01	24.91
PGSC0003DMT400029751	Potato	nucleus	19.74	24.19
PGSC0003DMT400063046	Potato	nucleus	26.75	23.64
PGSC0003DMT400072745	Potato	nucleus	25.0	20.43
PGSC0003DMT400068752	Potato	nucleus	15.13	17.92
PGSC0003DMT400084734	Potato	nucleus	18.2	17.85

Protein Annotations

EntrezGene:102583877	MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	UniProt:M1C4S2	PFAM:PF03110	EnsemblPlantsGene:PGSC0003DMG400023260	PGSC:PGSC0003DMG400023260
EnsemblPlants:PGSC0003DMT400059813	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF22	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI0002948D8A	RefSeq:XP_006354100.1	RefSeq:XP_006354101.1	SEG:seg	:

Description

LIGULELESS1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023260]

Coordinates

chr12:-:29311795..29315649

Molecular Weight (calculated)

50451.5 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.702

Length

456 amino acids

Sequence
(BLAST)

001: MESWSYVSGG KGFVSEESVS VDDGITPCSW SQQGVKNQQV GSQIRDVFGG EDESSSNHSS STYSKDSSLI DLKLGRGRFL DAKNFNLSST KRNRAGGLTS
101: FCQVQGCGKD LTSCKDYHKR HKVCEIHSKT AKVIVNGIQQ RFCQQCSRFH LLAEFDDGKR SCRKRLAGHN ERRRKPHTGL HSGRAGKHFQ PFSGTRFQSS
201: SFATSSFICQ DILGGSLLHQ PKHDMHDWYK NVKVEHCSNY SPQLTRPFTN KHSQPRPHFT SYHTDKHCPA LHDEGITTIT RSKNNESSNS YLNDIGGSDF
301: VSRSLFHSTS IGSEVLNVMD SASPFQGISN SGCALSLLSS QSQDTSNYSS VVPPSAHHLI TPRSNTHYNM TQTSECFPGA SPKGSASTVS NIYNLSEVIS
401: AEGHLEQMLR NNCGSLQGSD YVNTRNLLSC EDGTTIDLLQ LSSQLHQVEH QRHSMK

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.