Factsheet for Bra004363.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95958	Canola	nucleus	97.01	97.66
Bra038324.1-P	Field mustard	nucleus	69.44	64.11
AT1G69170.1	Thale cress	nucleus	70.43	52.35
Bra021880.1-P	Field mustard	nucleus	18.27	39.01
Bra032662.1-P	Field mustard	nucleus	20.27	38.61
Bra005470.1-P	Field mustard	nucleus	17.94	38.03
Bra027265.1-P	Field mustard	nucleus	18.94	31.84
Bra039656.1-P	Field mustard	nucleus	18.6	31.11
Bra021094.1-P	Field mustard	nucleus	17.94	30.68
Bra038101.1-P	Field mustard	nucleus	18.6	30.6
Solyc03g114850.2.1	Tomato	nucleus	22.92	26.04
KRH75117	Soybean	nucleus	41.53	25.88
KRH70968	Soybean	nucleus	41.2	25.73
Bra016891.1-P	Field mustard	nucleus	27.91	23.14
Bra004674.1-P	Field mustard	nucleus	27.91	22.76
Bra014599.1-P	Field mustard	nucleus	22.59	22.52
Bra003305.1-P	Field mustard	nucleus	23.26	22.15
KRH54739	Soybean	nucleus	27.91	22.11
Bra033221.1-P	Field mustard	nucleus	23.92	21.95
Bra022766.1-P	Field mustard	nucleus	24.92	21.93
Solyc12g038520.1.1	Tomato	nucleus	31.89	21.48
PGSC0003DMT400059813	Potato	nucleus	31.56	20.83
Bra032823.1-P	Field mustard	nucleus	22.59	20.73
Solyc05g012040.2.1	Tomato	nucleus	38.21	20.61
Bra033671.1-P	Field mustard	nucleus	24.58	20.44
PGSC0003DMT400072745	Potato	nucleus	37.54	20.25
Bra032822.1-P	Field mustard	nucleus	23.92	19.73
VIT_01s0011g00130.t01	Wine grape	nucleus	32.89	19.53
Bra030041.1-P	Field mustard	nucleus	23.92	19.25
Bra027478.1-P	Field mustard	nucleus	24.92	19.23
KRH56776	Soybean	nucleus	34.55	18.94
KRH03167	Soybean	nucleus	33.89	18.75
Bra030040.1-P	Field mustard	nucleus	24.25	18.72
Bra010949.1-P	Field mustard	nucleus	22.59	18.58
VIT_17s0000g05020.t01	Wine grape	nucleus	34.22	18.49
PGSC0003DMT400063046	Potato	nucleus	31.23	18.22
KRH63174	Soybean	nucleus	33.89	18.09

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra004363	EnsemblPlants:Bra004363.1	EnsemblPlants:Bra004363.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4CJH9
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF22	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI000254182F	SEG:seg	:	:	:

Description

AT1G69170 (E=7e-043) | squamosa promoter-binding protein-like 6 (SPL6)

Coordinates

chrA07:+:18243993..18244898

Molecular Weight (calculated)

34232.8 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.820

Length

301 amino acids

Sequence
(BLAST)

001: MDSWSYGTSF LPSDSFPENP RSVAQGLSNE FDKVDDRIDF KVRSFMDYGN YDGNTSSRAK KPRASSRSPL CQVHGCNMDL SSSKDYHKRH RVCEAHSKTS
101: VVIVNGVEQR FCQQCSRFHF LSEFDNGKRS CRRRLAGHNE RRRKPSFYFR HKLLPQGTNS LAGNKVHGRL VSFKDEPMFP AENMSFYSPE AAASGVSSIW
201: DLHEAGPPRS TCACSLLSAQ SQQCLSETNP NKSFSITQPN QTLNHSTIGY HQMLPPPLRT ISSSTVDLQQ LSSHLQRIEQ QQRSFTNDDV KQEYNNELYF
301: P

Best Arabidopsis Sequence Match ( AT1G69170.1 )
(BLAST)

001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS

Arabidopsis Description

SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.