Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81606 | Canola | nucleus | 61.73 | 75.08 |
| Bra038324.1-P | Field mustard | nucleus | 60.25 | 74.85 |
| CDY50300 | Canola | nucleus | 60.49 | 74.7 |
| CDX96251 | Canola | nucleus | 60.25 | 74.39 |
| Bra004363.1-P | Field mustard | nucleus | 52.35 | 70.43 |
| CDX95958 | Canola | nucleus | 51.85 | 70.23 |
| CDY69014 | Canola | nucleus | 53.58 | 68.03 |
| AT2G33810.1 | Thale cress | nucleus | 14.07 | 43.51 |
| AT1G53160.1 | Thale cress | nucleus | 13.83 | 32.18 |
| AT3G15270.1 | Thale cress | nucleus | 14.32 | 32.04 |
| KRH75117 | Soybean | nucleus | 37.78 | 31.68 |
| KRH70968 | Soybean | nucleus | 37.04 | 31.12 |
| Solyc03g114850.2.1 | Tomato | nucleus | 18.02 | 27.55 |
| KRH54739 | Soybean | nucleus | 23.7 | 25.26 |
| AT2G42200.1 | Thale cress | nucleus | 22.72 | 24.53 |
| AT5G50670.2 | Thale cress | nucleus | 21.73 | 24.51 |
| AT5G50570.2 | Thale cress | nucleus | 21.73 | 24.51 |
| AT1G02065.1 | Thale cress | nucleus | 19.75 | 24.02 |
| Solyc12g038520.1.1 | Tomato | nucleus | 26.42 | 23.94 |
| PGSC0003DMT400059813 | Potato | nucleus | 26.42 | 23.46 |
| AT3G57920.1 | Thale cress | nucleus | 20.49 | 23.45 |
| Solyc05g012040.2.1 | Tomato | nucleus | 30.62 | 22.22 |
| PGSC0003DMT400072745 | Potato | nucleus | 29.88 | 21.68 |
| VIT_17s0000g05020.t01 | Wine grape | nucleus | 28.64 | 20.83 |
| KRH56776 | Soybean | nucleus | 28.15 | 20.77 |
| KRH03167 | Soybean | nucleus | 27.65 | 20.59 |
| KRH63174 | Soybean | nucleus | 28.4 | 20.39 |
| AT5G43270.1 | Thale cress | nucleus | 20.99 | 20.29 |
| AT1G27370.1 | Thale cress | nucleus | 19.75 | 20.2 |
| VIT_01s0011g00130.t01 | Wine grape | nucleus | 24.44 | 19.53 |
| AT1G27360.1 | Thale cress | nucleus | 18.27 | 18.83 |
| PGSC0003DMT400063046 | Potato | nucleus | 23.95 | 18.8 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:843248 | UniProt:A0A178WHR9 | ProteinID:AAF27058.1 | ProteinID:AAG52487.1 |
| ProteinID:AEE34890.1 | EMBL:AF370612 | EMBL:AJ011643 | EMBL:AK227964 | ArrayExpress:AT1G69170 | EnsemblPlantsGene:AT1G69170 |
| RefSeq:AT1G69170 | TAIR:AT1G69170 | RefSeq:AT1G69170-TAIR-G | EnsemblPlants:AT1G69170.1 | TAIR:AT1G69170.1 | Unigene:At.500 |
| EMBL:BT006436 | ProteinID:CAB56596.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0042742 |
| GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | RefSeq:NP_177077.3 | ProteinID:OAP17796.1 | PFAM:PF03110 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 |
| UniProt:Q94JW8 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI00000A60C8 | SEG:seg |
Description
SPL6Squamosa promoter-binding-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94JW8]
Coordinates
chr1:+:26005068..26007368
Molecular Weight (calculated)
45955.2 Da
IEP (calculated)
7.739
GRAVY (calculated)
-0.794
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.