Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033671.1-P | Field mustard | nucleus | 71.36 | 82.6 |
| CDY22356 | Canola | nucleus | 84.01 | 67.82 |
| CDY47812 | Canola | nucleus | 82.82 | 67.25 |
| Os02t0139400-01 | Rice | nucleus | 29.36 | 43.62 |
| AT2G33810.1 | Thale cress | nucleus | 13.6 | 43.51 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 45.35 | 39.83 |
| PGSC0003DMT400084734 | Potato | nucleus | 40.81 | 36.77 |
| Os02t0174100-02 | Rice | nucleus | 21.96 | 36.65 |
| Solyc05g015510.2.1 | Tomato | nucleus | 40.33 | 36.5 |
| AT1G27370.1 | Thale cress | nucleus | 34.37 | 36.36 |
| AT1G27360.1 | Thale cress | nucleus | 33.65 | 35.88 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 37.71 | 34.5 |
| Solyc04g045560.2.1 | Tomato | nucleus | 27.45 | 32.86 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 32.46 | 32.69 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 26.97 | 32.66 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 25.54 | 32.62 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 25.3 | 32.62 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 25.3 | 32.42 |
| Zm00001d015410_P002 | Maize | nucleus | 25.54 | 32.23 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 34.84 | 32.16 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 26.73 | 32.0 |
| PGSC0003DMT400068752 | Potato | nucleus | 29.36 | 31.95 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 24.82 | 31.9 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 32.94 | 31.87 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 33.17 | 31.74 |
| EES04609 | Sorghum | nucleus | 25.3 | 31.45 |
| Zm00001d053775_P001 | Maize | nucleus | 24.82 | 31.42 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 34.37 | 31.03 |
| OQU77017 | Sorghum | nucleus | 32.46 | 30.91 |
| GSMUA_Achr10P... | Banana | nucleus | 36.99 | 30.75 |
| Zm00001d014698_P001 | Maize | nucleus | 31.98 | 30.52 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 34.13 | 30.49 |
| AT1G53160.1 | Thale cress | nucleus | 12.65 | 30.46 |
| Os06t0703500-02 | Rice | nucleus | 34.37 | 30.32 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 34.13 | 30.23 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 33.89 | 30.02 |
| AT3G15270.1 | Thale cress | nucleus | 12.89 | 29.83 |
| EES04495 | Sorghum | nucleus | 34.13 | 29.79 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 33.65 | 29.68 |
| GSMUA_Achr10P... | Banana | nucleus | 33.65 | 28.95 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 34.13 | 28.21 |
| Zm00001d053890_P003 | Maize | nucleus | 31.98 | 27.8 |
| Os06t0663500-00 | Rice | nucleus | 22.43 | 27.41 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 33.41 | 26.57 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 32.94 | 25.99 |
| AT3G57920.1 | Thale cress | nucleus | 20.53 | 24.29 |
| AT2G42200.1 | Thale cress | nucleus | 21.0 | 23.47 |
| AT1G02065.1 | Thale cress | nucleus | 18.14 | 22.82 |
| AT5G50670.2 | Thale cress | nucleus | 19.33 | 22.56 |
| AT5G50570.2 | Thale cress | nucleus | 19.33 | 22.56 |
| AT1G69170.1 | Thale cress | nucleus | 20.29 | 20.99 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:834345 | ProteinID:AED94933.1 | ProteinID:AED94934.1 | ProteinID:AED94935.1 |
| EMBL:AJ011625 | EMBL:AJ011626 | EMBL:AK230160 | ArrayExpress:AT5G43270 | EnsemblPlantsGene:AT5G43270 | RefSeq:AT5G43270 |
| TAIR:AT5G43270 | RefSeq:AT5G43270-TAIR-G | EnsemblPlants:AT5G43270.1 | TAIR:AT5G43270.1 | ProteinID:BAB10590.1 | EMBL:BT025984 |
| ProteinID:CAB56576.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0046872 |
| GO:GO:0048510 | GO:GO:0048653 | InterPro:IPR004333 | InterPro:IPR036893 | RefSeq:NP_199141.1 | RefSeq:NP_851122.1 |
| RefSeq:NP_974875.1 | PFAM:PF03110 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51141 | PANTHER:PTHR31251 |
| PANTHER:PTHR31251:SF30 | UniProt:Q9S840 | InterPro:SBP_dom | InterPro:SBP_sf | Symbol:SPL2 | SUPFAM:SSF103612 |
| UniParc:UPI00000ACFCE | SEG:seg | : | : | : | : |
Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
Coordinates
chr5:-:17360287..17363678
Molecular Weight (calculated)
46862.7 Da
IEP (calculated)
8.773
GRAVY (calculated)
-0.677
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.