Factsheet for GSMUA_Achr9P23140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21300_001
GSMUA_Achr8P18250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	GSMUA_Achr10P...	AT1G14920.1	22942378
AT1G27360.1	GSMUA_Achr1P21300_001	AT1G14920.1	22942378
AT1G27360.1	GSMUA_Achr8P18250_001	AT1G14920.1	22942378
AT1G27360.1	GSMUA_Achr10P...	AT2G01570.1	22942378
AT1G27360.1	GSMUA_Achr1P21300_001	AT2G01570.1	22942378
AT1G27360.1	GSMUA_Achr8P18250_001	AT2G01570.1	22942378
AT1G27370.1	GSMUA_Achr10P...	AT1G14920.1	22942378
AT1G27370.1	GSMUA_Achr1P21300_001	AT1G14920.1	22942378
AT1G27370.1	GSMUA_Achr8P18250_001	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P12470_001	Banana	nucleus	60.58	72.0
GSMUA_Achr4P05720_001	Banana	nucleus	57.69	69.36
GSMUA_Achr3P27750_001	Banana	nucleus	78.12	69.3
GSMUA_Achr9P14160_001	Banana	nucleus	49.28	44.76
GSMUA_Achr5P22630_001	Banana	nucleus	45.91	42.07
GSMUA_Achr3P05360_001	Banana	nucleus	46.63	41.81
GSMUA_Achr6P36010_001	Banana	nucleus	42.55	40.41
VIT_11s0065g00170.t01	Wine grape	nucleus	44.95	40.22
GSMUA_Achr10P...	Banana	nucleus	47.84	39.48
VIT_01s0010g03710.t01	Wine grape	nucleus	44.95	39.2
GSMUA_Achr5P21990_001	Banana	nucleus	40.14	38.57
PGSC0003DMT400084734	Potato	nucleus	41.11	36.77
Solyc05g015510.2.1	Tomato	nucleus	40.87	36.72
Bra033671.1-P	Field mustard	nucleus	31.49	36.19
GSMUA_Achr10P...	Banana	nucleus	41.59	35.52
PGSC0003DMT400068752	Potato	nucleus	32.45	35.06
CDY03913	Canola	nucleus	31.25	35.04
Solyc04g045560.2.1	Tomato	nucleus	29.33	34.86
KRG97402	Soybean	nucleus	36.06	34.64
CDY43604	Canola	nucleus	31.73	34.29
CDY27611	Canola	nucleus	30.05	34.25
Bra032822.1-P	Field mustard	nucleus	30.05	34.25
GSMUA_Achr8P23820_001	Banana	nucleus	43.27	34.16
Bra030040.1-P	Field mustard	nucleus	31.97	34.1
CDX84928	Canola	nucleus	29.81	34.07
CDY32959	Canola	nucleus	31.73	33.85
CDY15713	Canola	nucleus	31.73	33.85
Bra027478.1-P	Field mustard	nucleus	31.73	33.85
Bra032823.1-P	Field mustard	nucleus	26.68	33.84
CDY27612	Canola	nucleus	26.68	33.74
KRH31506	Soybean	nucleus	35.58	33.41
GSMUA_Achr6P27520_001	Banana	plastid	12.26	33.33
CDX84927	Canola	nucleus	29.09	32.97
GSMUA_Achr4P23650_001	Banana	nucleus	14.66	32.62
AT5G43270.1	Thale cress	nucleus	32.69	32.46
CDY03914	Canola	nucleus	28.85	32.26
GSMUA_Achr1P08440_001	Banana	nucleus	14.42	32.09
CDY67700	Canola	nucleus	26.68	32.08
Bra030041.1-P	Field mustard	nucleus	28.61	31.82
AT1G27370.1	Thale cress	nucleus	30.29	31.82
CDY15712	Canola	nucleus	28.12	31.28
CDY11816	Canola	nucleus	27.4	31.23
Bra010949.1-P	Field mustard	nucleus	27.16	30.87
GSMUA_Achr4P03880_001	Banana	nucleus	20.67	30.18
AT1G27360.1	Thale cress	nucleus	28.37	30.03
CDY22356	Canola	nucleus	35.82	28.71
CDY47812	Canola	nucleus	35.58	28.68
GSMUA_Achr10P...	Banana	nucleus	15.62	28.51
GSMUA_Achr3P00810_001	Banana	nucleus	17.31	28.24
GSMUA_Achr2P03070_001	Banana	nucleus	13.94	26.98
GSMUA_Achr8P25550_001	Banana	nucleus	21.88	26.45
GSMUA_Achr7P02020_001	Banana	nucleus	21.39	25.72
GSMUA_Achr4P20590_001	Banana	nucleus	16.59	25.37
GSMUA_Achr7P05010_001	Banana	nucleus	16.59	25.18
GSMUA_Achr9P27660_001	Banana	nucleus	22.12	24.93
GSMUA_Achr4P01450_001	Banana	nucleus	21.39	24.93
GSMUA_Achr7P20510_001	Banana	nucleus	19.95	24.34
GSMUA_Achr9P22260_001	Banana	nucleus	19.95	24.2
GSMUA_Achr5P13440_001	Banana	mitochondrion, nucleus	16.83	24.05
GSMUA_Achr2P11940_001	Banana	nucleus	18.03	23.58
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	17.31	22.57
GSMUA_AchrUn_...	Banana	nucleus	18.75	22.29
GSMUA_Achr4P26940_001	Banana	nucleus	18.51	22.19
GSMUA_Achr3P11170_001	Banana	nucleus	20.67	22.16
GSMUA_Achr4P24610_001	Banana	nucleus	17.31	21.95
GSMUA_AchrUn_...	Banana	nucleus	18.03	21.25
GSMUA_AchrUn_...	Banana	nucleus	18.99	21.24
GSMUA_Achr7P08750_001	Banana	nucleus	18.03	21.19
GSMUA_Achr6P06030_001	Banana	nucleus	18.51	20.87
GSMUA_Achr4P16050_001	Banana	nucleus	18.03	20.83
GSMUA_Achr9P20220_001	Banana	nucleus	12.02	20.33
GSMUA_Achr9P01380_001	Banana	nucleus	18.03	20.11
GSMUA_Achr9P29330_001	Banana	nucleus	18.27	19.9
GSMUA_Achr6P22280_001	Banana	nucleus	19.23	19.46
GSMUA_Achr2P06150_001	Banana	nucleus	18.27	19.34
GSMUA_Achr5P25090_001	Banana	nucleus	18.27	18.4
GSMUA_Achr11P...	Banana	nucleus	18.27	18.31

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr9G23140_001
EnsemblPlants:GSMUA_Achr9P23140_001	EnsemblPlants:GSMUA_Achr9T23140_001	InterPro:IPR004333	InterPro:IPR036893	UniProt:M0U2S3	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF24	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI000295085E	SEG:seg	:	:	:	:

Description

Putative Squamosa promoter-binding-like protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr9G23140_001]

Coordinates

chr9:-:28088238..28092700

Molecular Weight (calculated)

46188.8 Da

IEP (calculated)

7.433

GRAVY (calculated)

-0.695

Length

416 amino acids

Sequence
(BLAST)

001: MRSLMMDWNA NASLLWDWDN HAPFGGNCKL SAAAAGGASS GSELGNGSSS KSTISASFDS SSKAGKEPEF VANPRNHDKN RFLQESDCPP VAALAAGLEE
101: SQIGLKLGKR TYFEDVSAEM THQSAQSTFC QVEGCNVDLS EAKDYHRKHR VCVTHSKCPK VLVAGQERRF CQQCSRFHEL SEFDQKKRSC RRRLSDHNAR
201: RRKPRPNLIT FNSTDFSSSF YDDRHHMNLL WNKTLFGHMR SMASTTIEGS QNDKQTQMRG PWVKSTKELG IDEQLPLPNT QLSNGFFTLY HDVDKLLPLK
301: GTAAEVLNQG SEASAGASNF DGAPDLRRAL SLLSTNAWGS PDPGQPSSIV EFLDTNHHST AEPMMPTLNS SGQFFPGQSL AQQAQLLPFT MHRDDSHPQG
401: VQLQNRDTLF DPRQIH

Best Arabidopsis Sequence Match ( AT1G27370.1 )
(BLAST)

001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI

Arabidopsis Description

SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.