Factsheet for Bra030040.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27370.1	Bra039762.1-P	AT1G66350.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15713	Canola	nucleus	99.74	99.74
CDY03913	Canola	nucleus	90.51	95.15
Bra032822.1-P	Field mustard	nucleus	75.13	80.27
Bra032823.1-P	Field mustard	nucleus	60.77	72.26
Bra030041.1-P	Field mustard	nucleus	69.23	72.19
AT1G27370.1	Thale cress	nucleus	73.08	71.97
Bra010949.1-P	Field mustard	nucleus	66.15	70.49
Os02t0139400-01	Rice	nucleus	29.23	40.43
Bra005470.1-P	Field mustard	nucleus	13.59	37.32
Bra033671.1-P	Field mustard	nucleus	33.33	35.91
Bra027478.1-P	Field mustard	nucleus	35.64	35.64
Bra021880.1-P	Field mustard	nucleus	12.82	35.46
KRG97402	Soybean	nucleus	38.21	34.41
KRH31506	Soybean	nucleus	38.46	33.86
Os02t0174100-02	Rice	nucleus	21.28	33.07
GSMUA_Achr9P23140_001	Banana	nucleus	34.1	31.97
Bra032662.1-P	Field mustard	nucleus	12.82	31.65
GSMUA_Achr4P12470_001	Banana	nucleus	27.95	31.14
GSMUA_Achr9P14160_001	Banana	nucleus	36.15	30.79
VIT_11s0065g00170.t01	Wine grape	nucleus	36.67	30.75
Bra039656.1-P	Field mustard	nucleus	14.1	30.56
GSMUA_Achr6P36010_001	Banana	nucleus	34.1	30.37
GSMUA_Achr5P22630_001	Banana	nucleus	34.62	29.74
TraesCS6A01G155300.1	Wheat	nucleus	24.87	29.57
Bra038101.1-P	Field mustard	nucleus	13.85	29.51
TraesCS6B01G183400.1	Wheat	nucleus	24.62	29.36
TraesCS6D01G145200.1	Wheat	nucleus	24.36	29.23
GSMUA_Achr3P27750_001	Banana	nucleus	35.13	29.21
GSMUA_Achr4P05720_001	Banana	nucleus	25.9	29.19
HORVU6Hr1G031450.6	Barley	nucleus	24.36	29.14
Bra027265.1-P	Field mustard	nucleus	13.33	29.05
Bra021094.1-P	Field mustard	nucleus	13.08	28.98
GSMUA_Achr3P05360_001	Banana	nucleus	34.1	28.66
GSMUA_Achr5P21990_001	Banana	nucleus	31.79	28.64
Zm00001d015410_P002	Maize	nucleus	24.36	28.61
EES04609	Sorghum	nucleus	24.62	28.49
Zm00001d014698_P001	Maize	nucleus	31.54	28.02
OQU77017	Sorghum	nucleus	31.54	27.95
TraesCS6D01G098500.1	Wheat	nucleus	33.85	27.91
Zm00001d053775_P001	Maize	nucleus	23.59	27.79
TraesCS6B01G138400.1	Wheat	nucleus	33.59	27.7
TraesCS6A01G110100.2	Wheat	nucleus	33.59	27.58
EES04495	Sorghum	nucleus	33.85	27.5
Os06t0703500-02	Rice	nucleus	33.08	27.16
GSMUA_Achr10P...	Banana	nucleus	34.87	26.98
GSMUA_Achr10P...	Banana	nucleus	33.33	26.69
HORVU6Hr1G019700.3	Barley	nucleus	34.1	26.23
Os06t0663500-00	Rice	nucleus	22.82	25.95
Zm00001d053890_P003	Maize	nucleus	31.79	25.73
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	34.1	25.05
Bra004363.1-P	Field mustard	nucleus	18.72	24.25
Bra038324.1-P	Field mustard	nucleus	19.49	23.31
Bra016891.1-P	Field mustard	nucleus	21.03	22.59
GSMUA_Achr8P23820_001	Banana	nucleus	30.51	22.58
Bra004674.1-P	Field mustard	nucleus	21.28	22.49
Bra033221.1-P	Field mustard	nucleus	18.46	21.95
Bra022766.1-P	Field mustard	nucleus	19.23	21.93
Bra003305.1-P	Field mustard	nucleus	17.69	21.84
Bra014599.1-P	Field mustard	nucleus	16.15	20.86

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra030040	EnsemblPlants:Bra030040.1	EnsemblPlants:Bra030040.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0010358	GO:GO:0043565	GO:GO:0045893	GO:GO:0046872
GO:GO:0048510	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4EMM0	PFAM:PF03110	PFscan:PS51141
PANTHER:PTHR31251	PANTHER:PTHR31251:SF30	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI00025411B5
SEG:seg	:	:	:	:	:

Description

AT1G27360 (E=1e-151) | squamosa promoter-binding protein-like 11 (SPL11)

Coordinates

chrA07:-:7000003..7001504

Molecular Weight (calculated)

43668.8 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.780

Length

390 amino acids

Sequence
(BLAST)

001: MDCNMRSPFL WDLENLILPN SSKTENDKDQ LTTATEWETE KGEGIESMFP CFNGLERVSN CSTTSLWHTP VSKSSQSTST NSSSPGVKQR MLASESSPGD
101: SCCNIQVKAS VASAESDLSL KLGKRTYSEE LWGRSNNNDI SAVSVKLLTP PSVVSRKKSK SSCGQSMQVP RCQIDGCELD LSSAKDYHRK HRVCENHSKC
201: PKVTVSGIER RFCQQCSRFH AVSEFDEKKR SCRKRLSHHN ARRRKPQGVF PFNPDRVYDR RQHTNMLWNG LSLDTRSEEK FAWETTYDIK PTQTESGFTL
301: SFQRGNGSEQ QLFASSNHSY STYQTSGGLS AGKPKFQLHG QGVGEYSGVL HESQEFHRAL SLLSTSSSDH LVQPHAQPLS LLFSYDGVPK

Best Arabidopsis Sequence Match ( AT1G27360.4 )
(BLAST)

001: MDCNMVSSSQ WDWEHLIMSN PSRTEDDSKQ LPTEWEIEKG EGIESIVPHF SGLERVSSGS ATSFWHTAVS KSSQSTSINS SSPEAKRCKL ASESSPGDSC
101: SNIDFVQVKA PTALEVSVAS AESDLCLKLG KRTYSEEYWG RNNNEISAVS MKLLTPSVVA GKSKLCGQSM PVPRCQIDGC ELDLSSAKGY HRKHKVCEKH
201: SKCPKVSVSG LERRFCQQCS RFHAVSEFDE KKRSCRKRLS HHNARRRKPQ GVFSMNPERV YDRRQHTNML WNGVSLNARS EEMYEWGNNT YDTKPRQTEK
301: SFTLSFQRGN GSEDQLVASS SRMFSTSQTS GGFPAGKSKF QLHGEDVGEY SGVLHESQDI HRALSLLSTS SDPLAQPHVQ PFSLLCSYDV VPK

Arabidopsis Description

SPL11Squamosa promoter-binding-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.