Factsheet for Bra039656.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24113	Canola	nucleus	88.89	99.38
CDY61210	Canola	nucleus	97.78	98.32
Bra038101.1-P	Field mustard	nucleus	84.44	83.06
AT1G53160.1	Thale cress	nucleus	76.11	78.74
Bra027265.1-P	Field mustard	nucleus	66.11	66.48
Bra021094.1-P	Field mustard	nucleus	65.0	66.48
VIT_10s0003g00050.t01	Wine grape	nucleus	43.89	56.43
Bra005470.1-P	Field mustard	nucleus	43.33	54.93
PGSC0003DMT400058753	Potato	nucleus	40.0	53.33
Solyc10g009080.2.1	Tomato	nucleus	39.44	52.59
PGSC0003DMT400076399	Potato	nucleus	38.89	51.47
Solyc02g077920.2.1	Tomato	nucleus	37.78	50.0
Bra021880.1-P	Field mustard	nucleus	36.67	46.81
KRH10909	Soybean	nucleus	35.0	45.65
KRH21401	Soybean	nucleus	35.0	45.65
KRH50085	Soybean	nucleus	36.67	45.21
KRH20415	Soybean	nucleus	35.56	45.07
Bra032662.1-P	Field mustard	nucleus	31.67	36.08
Os07t0505200-01	Rice	nucleus	38.89	32.41
EER97257	Sorghum	nucleus	36.11	30.23
Zm00001d021573_P001	Maize	mitochondrion	30.56	26.7
Zm00001d006451_P001	Maize	mitochondrion	37.22	26.38
KXG36284	Sorghum	nucleus	31.11	25.69
Bra004363.1-P	Field mustard	nucleus	31.11	18.6
Bra033221.1-P	Field mustard	nucleus	32.78	17.99
Bra038324.1-P	Field mustard	nucleus	31.11	17.18
Bra014599.1-P	Field mustard	nucleus	27.22	16.23
Bra022766.1-P	Field mustard	nucleus	30.56	16.08
Bra016891.1-P	Field mustard	nucleus	32.22	15.98
Bra003305.1-P	Field mustard	nucleus	27.78	15.82
Bra004674.1-P	Field mustard	nucleus	32.22	15.72
Bra032823.1-P	Field mustard	nucleus	27.78	15.24
Bra030040.1-P	Field mustard	nucleus	30.56	14.1
Bra033671.1-P	Field mustard	nucleus	28.33	14.09
Bra032822.1-P	Field mustard	nucleus	28.33	13.97
Bra010949.1-P	Field mustard	nucleus	28.33	13.93
Bra030041.1-P	Field mustard	nucleus	27.78	13.37
Bra027478.1-P	Field mustard	nucleus	27.78	12.82

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra039656	EnsemblPlants:Bra039656.1	EnsemblPlants:Bra039656.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4FEY4	PFAM:PF03110
PIRSF:PIRSF037575	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF64	InterPro:SBP_dom	InterPro:SBP_fam
InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI000253E7FE	SEG:seg	:	:

Description

AT1G53160 (E=4e-046) SPL4 | SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor

Coordinates

chrA06:-:712141..713134

Molecular Weight (calculated)

20582.3 Da

IEP (calculated)

10.012

GRAVY (calculated)

-1.176

Length

180 amino acids

Sequence
(BLAST)

001: MDGKKTQGQG YLKKKASVSY LVEEELENDT DGEEEEKRKC VTDRFKGSSG SNDRGSSRLC QVDRCTADLK EAKQYHRRHK VCEVHAKASS VYLTGVKQRF
101: CQQCSRFHEL LEFDEAKRSC RKRLAGHNER RRKSSGESIG EGSGGRRGIT AQMIQNQERS RVEMTLPMSN TSSFKRPQIR

Best Arabidopsis Sequence Match ( AT1G53160.2 )
(BLAST)

001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR

Arabidopsis Description

SPL4Squamosa promoter-binding-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7A9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.