Factsheet for Bra005470.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17204	Canola	nucleus	96.48	96.48
AT2G33810.1	Thale cress	nucleus	76.06	82.44
Bra021880.1-P	Field mustard	nucleus	74.65	75.18
Solyc10g009080.2.1	Tomato	nucleus	57.75	60.74
PGSC0003DMT400058753	Potato	nucleus	57.04	60.0
PGSC0003DMT400076399	Potato	nucleus	54.23	56.62
VIT_10s0003g00050.t01	Wine grape	nucleus	55.63	56.43
Solyc02g077920.2.1	Tomato	nucleus	52.82	55.15
KRH10909	Soybean	nucleus	47.18	48.55
KRH21401	Soybean	nucleus	46.48	47.83
KRH20415	Soybean	nucleus	46.48	46.48
KRH50085	Soybean	nucleus	46.48	45.21
Bra039656.1-P	Field mustard	nucleus	54.93	43.33
Bra038101.1-P	Field mustard	nucleus	55.63	43.17
Bra027265.1-P	Field mustard	nucleus	52.11	41.34
Bra021094.1-P	Field mustard	nucleus	50.7	40.91
Bra032662.1-P	Field mustard	nucleus	40.14	36.08
EER97257	Sorghum	nucleus	45.07	29.77
Os07t0505200-01	Rice	nucleus	44.37	29.17
Zm00001d021573_P001	Maize	mitochondrion	38.73	26.7
Zm00001d006451_P001	Maize	mitochondrion	44.37	24.8
KXG36284	Sorghum	nucleus	38.03	24.77
Bra033221.1-P	Field mustard	nucleus	41.55	17.99
Bra004363.1-P	Field mustard	nucleus	38.03	17.94
Bra038324.1-P	Field mustard	nucleus	38.03	16.56
Bra014599.1-P	Field mustard	nucleus	34.51	16.23
Bra032823.1-P	Field mustard	nucleus	36.62	15.85
Bra022766.1-P	Field mustard	nucleus	38.03	15.79
Bra033671.1-P	Field mustard	nucleus	40.14	15.75
Bra003305.1-P	Field mustard	nucleus	34.51	15.51
Bra016891.1-P	Field mustard	nucleus	38.73	15.15
Bra004674.1-P	Field mustard	nucleus	38.03	14.63
Bra010949.1-P	Field mustard	nucleus	36.62	14.21
Bra032822.1-P	Field mustard	nucleus	35.92	13.97
Bra027478.1-P	Field mustard	nucleus	38.03	13.85
Bra030041.1-P	Field mustard	nucleus	35.92	13.64
Bra030040.1-P	Field mustard	nucleus	37.32	13.59

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra005470	EnsemblPlants:Bra005470.1	EnsemblPlants:Bra005470.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4CMN2
PFAM:PF03110	PIRSF:PIRSF037575	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF62	InterPro:SBP_dom
InterPro:SBP_fam	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0002547307	SEG:seg	:

Description

AT2G33810 (E=4e-043) SPL3 | SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); DNA binding / transcription factor

Coordinates

chrA05:-:5668800..5669314

Molecular Weight (calculated)

16488.0 Da

IEP (calculated)

8.145

GRAVY (calculated)

-1.417

Length

142 amino acids

Sequence
(BLAST)

001: MKGSKAEAKR SLREMSEEEE EEEEEDTFEE EEALVKKQKG KATSSSSSST GACQVERCTA DMSRAKQYHR RHKVCEFHAK APVVRIYGLH QRFCQQCSRF
101: HDLGEFDESK RSCRRRLAGH NERRRKSATE GERSQNHGSQ DY

Best Arabidopsis Sequence Match ( AT2G33810.1 )
(BLAST)

001: MSMRRSKAEG KRSLRELSEE EEEEEETEDE DTFEEEEALE KKQKGKATSS SGVCQVESCT ADMSKAKQYH KRHKVCQFHA KAPHVRISGL HQRFCQQCSR
101: FHALSEFDEA KRSCRRRLAG HNERRRKSTT D

Arabidopsis Description

SPL3Squamosa promoter-binding-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P93015]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.