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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra013973.1-P
Bra017443.1-P
Bra024875.1-P
Bra031991.1-P
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G27360.1 Bra039762.1-P AT1G66350.1 22942378
AT1G27360.1 Bra017443.1-P AT2G01570.1 22942378
AT1G27360.1 Bra024875.1-P AT2G01570.1 22942378
AT1G27360.1 Bra031991.1-P AT3G03450.1 22942378
AT1G27360.1 Bra013973.1-P AT5G17490.1 22942378
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27612 Canola nucleus 99.09 98.78
Bra010949.1-P Field mustard nucleus 72.87 65.3
Bra030041.1-P Field mustard nucleus 73.17 64.17
Bra032822.1-P Field mustard nucleus 70.12 63.01
AT1G27360.1 Thale cress nucleus 72.87 60.81
Bra030040.1-P Field mustard nucleus 72.26 60.77
Os02t0139400-01 Rice nucleus 32.32 37.59
Bra005470.1-P Field mustard nucleus 15.85 36.62
Bra021880.1-P Field mustard nucleus 14.94 34.75
Os02t0174100-02 Rice nucleus 25.91 33.86
Bra032662.1-P Field mustard nucleus 16.16 33.54
Bra033671.1-P Field mustard nucleus 33.54 30.39
Bra027478.1-P Field mustard nucleus 35.06 29.49
KRG97402 Soybean nucleus 37.2 28.18
Bra027265.1-P Field mustard nucleus 15.24 27.93
Bra039656.1-P Field mustard nucleus 15.24 27.78
KRH31506 Soybean nucleus 37.2 27.54
Bra021094.1-P Field mustard nucleus 14.63 27.27
GSMUA_Achr9P23140_001 Banana nucleus 33.84 26.68
Bra038101.1-P Field mustard nucleus 14.63 26.23
GSMUA_Achr4P05720_001 Banana nucleus 27.44 26.01
Zm00001d015410_P002 Maize nucleus 26.22 25.9
VIT_11s0065g00170.t01 Wine grape nucleus 36.59 25.81
GSMUA_Achr5P22630_001 Banana nucleus 35.67 25.77
GSMUA_Achr4P12470_001 Banana nucleus 27.44 25.71
TraesCS6A01G155300.1 Wheat nucleus 25.61 25.61
GSMUA_Achr9P14160_001 Banana nucleus 35.67 25.55
TraesCS6D01G145200.1 Wheat nucleus 25.3 25.54
TraesCS6B01G183400.1 Wheat nucleus 25.3 25.38
EES04609 Sorghum nucleus 25.91 25.22
HORVU6Hr1G031450.6 Barley nucleus 25.0 25.15
GSMUA_Achr6P36010_001 Banana nucleus 33.54 25.11
Zm00001d053775_P001 Maize nucleus 25.0 24.77
GSMUA_Achr3P27750_001 Banana nucleus 35.37 24.73
GSMUA_Achr5P21990_001 Banana nucleus 32.62 24.71
GSMUA_Achr3P05360_001 Banana nucleus 34.45 24.35
TraesCS6B01G138400.1 Wheat nucleus 35.06 24.31
TraesCS6D01G098500.1 Wheat nucleus 35.06 24.31
EES04495 Sorghum nucleus 35.06 23.96
TraesCS6A01G110100.2 Wheat nucleus 34.45 23.79
HORVU6Hr1G019700.3 Barley nucleus 35.67 23.08
GSMUA_Achr10P... Banana nucleus 34.15 23.0
OQU77017 Sorghum nucleus 30.79 22.95
Bra004363.1-P Field mustard nucleus 20.73 22.59
Zm00001d014698_P001 Maize nucleus 30.18 22.55
Os06t0663500-00 Rice nucleus 23.48 22.45
Os06t0703500-02 Rice nucleus 32.32 22.32
GSMUA_Achr10P... Banana nucleus 33.54 21.83
Bra033221.1-P Field mustard nucleus 21.34 21.34
Bra038324.1-P Field mustard nucleus 21.04 21.17
Zm00001d053890_P003 Maize nucleus 30.49 20.75
Zm00001d015233_P001 Maize mitochondrion, nucleus, plastid 33.54 20.72
Bra016891.1-P Field mustard nucleus 22.26 20.11
Bra004674.1-P Field mustard nucleus 22.56 20.05
Bra003305.1-P Field mustard nucleus 18.9 19.62
Bra014599.1-P Field mustard nucleus 17.99 19.54
Bra022766.1-P Field mustard nucleus 19.82 19.01
GSMUA_Achr8P23820_001 Banana nucleus 30.49 18.98
Protein Annotations
MapMan:15.5.18Gene3D:4.10.1100.10EnsemblPlantsGene:Bra032823EnsemblPlants:Bra032823.1EnsemblPlants:Bra032823.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0046872InterPro:IPR004333InterPro:IPR036893UniProt:M4EVJ0PFAM:PF03110
PFscan:PS51141PANTHER:PTHR31251PANTHER:PTHR31251:SF62InterPro:SBP_domInterPro:SBP_sfSUPFAM:SSF103612
UniParc:UPI0002542598SEG:seg::::
Description
AT1G27370 (E=5e-122) | squamosa promoter-binding protein-like 10 (SPL10)
Coordinates
chrA09:+:12594145..12595411
Molecular Weight (calculated)
36680.7 Da
IEP (calculated)
8.980
GRAVY (calculated)
-0.853
Length
328 amino acids
Sequence
(BLAST)
001: MDCNMTSPLW DWDHFLMSNP SKPDNDKRQP SSEWGIEKGE GIESIFPSFE RVSSGGSTTG FSTNSSSPIF RHANLPSETS PGDSFSNIDF VQVKTSTAES
101: DLCLKLGKQT YSEDFWGRSN NEVSAVSVKL LAPSVVARKK SKPYGQSSMQ VPRCQVDGCE LDLSSAKDYH RKHRVCETHS KCPKVTVGGL ERRFCQQCSR
201: LHAVSEFDEK KRSCRKRLSH HNARRRKPQG VFPLNPERNC NGRQHPNMLW NGLSLNTVPD EKYVWSPSYD TKPTQMESGF TLSFQRGRGP EEHLYAGSSR
301: SFSTFQTSGG FSAGRSNSQL PGKGVGEY
Best Arabidopsis Sequence Match ( AT1G27370.1 )
(BLAST)
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.