Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G006930.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27360.1 | HORVU4Hr1G006930.1 | AT1G14920.1 | 22942378 |
| AT1G27360.1 | HORVU4Hr1G006930.1 | AT2G01570.1 | 22942378 |
| AT1G27370.1 | HORVU4Hr1G006930.1 | AT1G14920.1 | 22942378 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G183400.1 | Wheat | nucleus | 96.32 | 96.02 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 94.79 | 95.08 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 95.4 | 94.82 |
| EES04609 | Sorghum | nucleus | 72.09 | 69.73 |
| Zm00001d053775_P001 | Maize | nucleus | 69.02 | 67.98 |
| Zm00001d015410_P002 | Maize | nucleus | 67.18 | 65.96 |
| Os06t0663500-00 | Rice | nucleus | 52.45 | 49.85 |
| HORVU2Hr1G097610.1 | Barley | nucleus | 19.94 | 32.02 |
| HORVU2Hr1G097580.1 | Barley | nucleus | 19.94 | 31.1 |
| KRG97402 | Soybean | nucleus | 38.65 | 29.1 |
| KRH31506 | Soybean | nucleus | 38.65 | 28.44 |
| VIT_01s0010g03710.t01 | Wine grape | nucleus | 41.1 | 28.09 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 39.57 | 27.74 |
| Solyc04g045560.2.1 | Tomato | nucleus | 29.75 | 27.71 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 36.81 | 27.71 |
| HORVU2Hr1G048280.2 | Barley | plastid | 16.26 | 27.18 |
| PGSC0003DMT400068752 | Potato | nucleus | 31.9 | 27.01 |
| Bra033671.1-P | Field mustard | nucleus | 29.14 | 26.24 |
| Solyc05g015510.2.1 | Tomato | nucleus | 37.12 | 26.13 |
| PGSC0003DMT400084734 | Potato | nucleus | 36.81 | 25.81 |
| CDX84928 | Canola | nucleus | 28.53 | 25.55 |
| CDY27611 | Canola | nucleus | 28.53 | 25.48 |
| Bra032822.1-P | Field mustard | nucleus | 28.53 | 25.48 |
| CDY03913 | Canola | nucleus | 28.53 | 25.07 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 38.96 | 25.05 |
| Bra032823.1-P | Field mustard | nucleus | 25.15 | 25.0 |
| CDY43604 | Canola | nucleus | 29.45 | 24.94 |
| CDY27612 | Canola | nucleus | 25.15 | 24.92 |
| Bra027478.1-P | Field mustard | nucleus | 29.75 | 24.87 |
| CDY32959 | Canola | nucleus | 29.75 | 24.87 |
| AT5G43270.1 | Thale cress | nucleus | 31.9 | 24.82 |
| Bra030040.1-P | Field mustard | nucleus | 29.14 | 24.36 |
| CDX84927 | Canola | nucleus | 27.3 | 24.25 |
| CDY03914 | Canola | nucleus | 27.61 | 24.19 |
| CDY15713 | Canola | nucleus | 28.83 | 24.1 |
| Bra030041.1-P | Field mustard | nucleus | 27.61 | 24.06 |
| CDY15712 | Canola | nucleus | 27.61 | 24.06 |
| CDY67700 | Canola | nucleus | 25.46 | 23.99 |
| AT1G27370.1 | Thale cress | nucleus | 28.53 | 23.48 |
| CDY11816 | Canola | nucleus | 26.07 | 23.29 |
| Bra010949.1-P | Field mustard | nucleus | 25.77 | 22.95 |
| AT1G27360.1 | Thale cress | nucleus | 27.61 | 22.9 |
| HORVU0Hr1G039170.6 | Barley | nucleus | 25.77 | 21.0 |
| CDY22356 | Canola | nucleus | 32.82 | 20.62 |
| HORVU5Hr1G076380.9 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 24.54 | 20.41 |
| CDY47812 | Canola | nucleus | 31.9 | 20.16 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 25.46 | 19.95 |
| HORVU3Hr1G094730.2 | Barley | nucleus | 25.77 | 19.58 |
| HORVU7Hr1G110980.3 | Barley | nucleus, plastid | 20.86 | 15.14 |
| HORVU6Hr1G030490.2 | Barley | nucleus, plastid | 21.47 | 14.26 |
| HORVU2Hr1G111620.1 | Barley | cytosol, nucleus | 0.31 | 1.56 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:HORVU6Hr1G031450 | EnsemblPlants:HORVU6Hr1G031450.6 |
| InterPro:IPR004333 | InterPro:IPR036893 | UniProt:M0XRS7 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 |
| PANTHER:PTHR31251:SF7 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI000295B3CA | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:-:133169237..133173290
Molecular Weight (calculated)
35084.2 Da
IEP (calculated)
9.258
GRAVY (calculated)
-0.649
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWTAPKSTP SSPPHLLWDW GDAAALGSSG EAAGRRGKEK RARGEGAGGG GGGGGVRCQV EGCGTELAAA KEYHRKHRVC EAHTKSPRVV VAGQERRFCQ
101: QCSRFHGLSE FDQKKRSCRR RLSDHNARRR KPQPDAFSFA PARLPSSLMF DDRRQISFVW DKDPLSHGRP FPCSPWDSPS DFKPPQVKEI REVSINGQVH
201: FDKSHLPNAV PALSHDIAEL LPMKGPDASA TASKLGGAPD LQRALSLLSA SSCGLPDPVQ QASCLVQFTG ASQNSRGLPS PHGGSPPSAS CAEGQPMAPS
301: PQFVRFTMDG ASSGYESTFF GVNRMN
101: QCSRFHGLSE FDQKKRSCRR RLSDHNARRR KPQPDAFSFA PARLPSSLMF DDRRQISFVW DKDPLSHGRP FPCSPWDSPS DFKPPQVKEI REVSINGQVH
201: FDKSHLPNAV PALSHDIAEL LPMKGPDASA TASKLGGAPD LQRALSLLSA SSCGLPDPVQ QASCLVQFTG ASQNSRGLPS PHGGSPPSAS CAEGQPMAPS
301: PQFVRFTMDG ASSGYESTFF GVNRMN
001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN
Arabidopsis Description
SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.