Factsheet for HORVU0Hr1G039170.6

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G158500.1	Wheat	nucleus	93.5	91.44
TraesCS7A01G260500.1	Wheat	nucleus	92.75	91.15
TraesCS7D01G261500.1	Wheat	nucleus	93.5	90.34
KXG25534	Sorghum	nucleus	75.0	65.79
Zm00001d049822_P001	Maize	nucleus	68.25	63.19
Zm00001d049824_P002	Maize	nucleus	68.25	62.76
Os08t0531600-01	Rice	nucleus	69.75	61.32
GSMUA_AchrUn_...	Banana	nucleus	46.25	52.86
HORVU5Hr1G076380.9	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	51.0	52.04
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	38.75	48.59
GSMUA_AchrUn_...	Banana	nucleus	44.25	47.58
GSMUA_AchrUn_...	Banana	nucleus	41.0	46.46
GSMUA_Achr5P25090_001	Banana	nucleus	46.75	45.28
GSMUA_Achr11P...	Banana	nucleus	42.5	40.96
GSMUA_Achr4P16050_001	Banana	nucleus	36.0	40.0
VIT_14s0068g01780.t01	Wine grape	nucleus	35.0	37.04
HORVU2Hr1G097610.1	Barley	nucleus	17.75	34.98
KRG94562	Soybean	nucleus	31.75	34.79
KRH06918	Soybean	nucleus	31.0	33.97
HORVU2Hr1G097580.1	Barley	nucleus	17.75	33.97
HORVU3Hr1G094730.2	Barley	nucleus	35.75	33.33
HORVU2Hr1G048280.2	Barley	plastid	14.5	29.74
HORVU6Hr1G031450.6	Barley	nucleus	21.0	25.77
HORVU5Hr1G073440.7	Barley	nucleus	21.5	20.67
HORVU7Hr1G110980.3	Barley	nucleus, plastid	20.5	18.26
HORVU6Hr1G019700.3	Barley	nucleus	22.75	17.95
HORVU6Hr1G030490.2	Barley	nucleus, plastid	20.5	16.7
CDX80286	Canola	cytosol, nucleus, plasma membrane	0.75	5.17
HORVU2Hr1G111620.1	Barley	cytosol, nucleus	0.25	1.56

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:A0A287ECX9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
EnsemblPlantsGene:HORVU0Hr1G039170	EnsemblPlants:HORVU0Hr1G039170.6	InterPro:IPR004333	InterPro:IPR036893	PFAM:PF03110	PFscan:PS51141
PANTHER:PTHR31251	PANTHER:PTHR31251:SF33	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI000B464A3A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:248141436..248146524

Molecular Weight (calculated)

43045.3 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.524

Length

400 amino acids

Sequence
(BLAST)

001: MDWDLKMPPG AWDLADLESD AAPAPAGGIA NAECSVDLKL GGLGECGAAP DTRGLGKAPA EAAASPSAAK RPRASSGGGA GQHQQCPSCA VDGCRADLSR
101: CRDYHRRHKV CEAHSKTPVV TVAGREMRFC QQCSRFHLLT EFDEAKRSCR KRLDGHNRRR RKPQPDPMNS ASFMTSQQAF LRNPGTRFPS FPTPRPEQNW
201: PGIIKTEENP YYTHQLPLGI SNRHHFGGST STFAKEGRRF PFLQEGEINF ATGVALEPAV CQPLLKTVAP PESSSSSSKM FSDGLTPVLD SDCALSLLSA
301: PANSSGIDVG QMVQQTEHIP IAQPLFSNLQ QFSSSSWFSR TQASTGTVSA TGFSCPVVEN EQLNNVLTSD NNDLNYNGIF HVGGEGSSDG APPSLPFPWQ

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.