Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20128 | Canola | nucleus | 96.55 | 31.82 |
| CDY32310 | Canola | nucleus | 93.1 | 30.68 |
| CDX97645 | Canola | nucleus | 77.59 | 25.14 |
| CDX98540 | Canola | nucleus | 77.59 | 25.14 |
| CDY24113 | Canola | nucleus | 46.55 | 16.77 |
| CDY61210 | Canola | nucleus | 46.55 | 15.08 |
| CDY25876 | Canola | nucleus | 44.83 | 14.77 |
| CDY50515 | Canola | nucleus | 37.93 | 14.01 |
| CDY17204 | Canola | nucleus | 17.24 | 7.04 |
| CDY27935 | Canola | nucleus | 17.24 | 6.8 |
| CDY57212 | Canola | nucleus | 13.79 | 5.67 |
| CDY37684 | Canola | nucleus | 13.79 | 5.67 |
| CDX79544 | Canola | nucleus | 10.34 | 3.21 |
| VIT_14s0068g01780.t01 | Wine grape | nucleus | 17.24 | 2.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 12.07 | 2.0 |
| CDX71667 | Canola | nucleus | 12.07 | 1.95 |
| CDX84872 | Canola | nucleus | 10.34 | 1.76 |
| CDY45826 | Canola | nucleus | 10.34 | 1.76 |
| CDY34028 | Canola | nucleus | 10.34 | 1.72 |
| CDX79888 | Canola | nucleus | 10.34 | 1.63 |
| CDY61750 | Canola | nucleus | 8.62 | 1.62 |
| CDY53504 | Canola | nucleus | 10.34 | 1.62 |
| Zm00001d049824_P002 | Maize | nucleus | 12.07 | 1.61 |
| CDX98259 | Canola | nucleus | 8.62 | 1.54 |
| KXG25534 | Sorghum | nucleus | 12.07 | 1.54 |
| CDY38043 | Canola | nucleus | 8.62 | 1.49 |
| CDY67700 | Canola | nucleus | 8.62 | 1.45 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 8.62 | 1.39 |
| CDY06881 | Canola | nucleus | 8.62 | 1.38 |
| KRG94562 | Soybean | nucleus | 8.62 | 1.37 |
| CDY14818 | Canola | nucleus | 8.62 | 1.36 |
| GSMUA_Achr6P06030_001 | Banana | nucleus | 8.62 | 1.36 |
| GSMUA_Achr9P01380_001 | Banana | nucleus | 8.62 | 1.34 |
| Os08t0531600-01 | Rice | nucleus | 10.34 | 1.32 |
| GSMUA_Achr9P29330_001 | Banana | nucleus | 8.62 | 1.31 |
| GSMUA_Achr6P27520_001 | Banana | plastid | 3.45 | 1.31 |
| CDY15132 | Canola | nucleus | 5.17 | 1.29 |
| GSMUA_Achr2P06150_001 | Banana | nucleus | 8.62 | 1.27 |
| CDX67715 | Canola | nucleus | 6.9 | 1.27 |
| CDY47656 | Canola | nucleus | 6.9 | 1.23 |
| TraesCS7B01G158500.1 | Wheat | nucleus | 8.62 | 1.22 |
| TraesCS7D01G261500.1 | Wheat | nucleus | 8.62 | 1.21 |
| TraesCS5D01G294400.1 | Wheat | nucleus | 8.62 | 1.16 |
| Zm00001d049822_P001 | Maize | nucleus | 8.62 | 1.16 |
| TraesCS5B01G286000.1 | Wheat | nucleus | 8.62 | 1.15 |
| TraesCS5A01G286700.2 | Wheat | nucleus | 8.62 | 1.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.9 | 1.13 |
| CDX84928 | Canola | nucleus | 6.9 | 1.1 |
| KRH06918 | Soybean | nucleus | 6.9 | 1.1 |
| CDY11816 | Canola | nucleus | 6.9 | 1.1 |
| CDY27611 | Canola | nucleus | 6.9 | 1.1 |
| CDY03913 | Canola | nucleus | 6.9 | 1.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.9 | 1.08 |
| Os09t0507100-00 | Rice | nucleus | 8.62 | 1.06 |
| EES01979 | Sorghum | nucleus | 6.9 | 0.99 |
| TraesCS7A01G260500.1 | Wheat | nucleus | 6.9 | 0.98 |
| CDX90071 | Canola | nucleus | 5.17 | 0.96 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 5.17 | 0.94 |
| CDY27612 | Canola | nucleus | 5.17 | 0.91 |
| CDX84927 | Canola | nucleus | 5.17 | 0.82 |
| Zm00001d012015_P001 | Maize | nucleus | 5.17 | 0.8 |
| CDY15713 | Canola | nucleus | 5.17 | 0.77 |
| HORVU0Hr1G039170.6 | Barley | nucleus | 5.17 | 0.75 |
| Zm00001d042319_P001 | Maize | nucleus | 5.17 | 0.73 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 5.17 | 0.72 |
| GSMUA_Achr11P... | Banana | nucleus | 5.17 | 0.72 |
| TraesCS3A01G432500.1 | Wheat | nucleus | 5.17 | 0.72 |
| TraesCS3D01G425800.1 | Wheat | nucleus | 5.17 | 0.72 |
| Zm00001d006091_P001 | Maize | nucleus | 5.17 | 0.71 |
| HORVU3Hr1G094730.2 | Barley | nucleus | 5.17 | 0.7 |
| CDX95958 | Canola | nucleus | 3.45 | 0.67 |
| EER97011 | Sorghum | nucleus | 5.17 | 0.65 |
| Zm00001d021056_P001 | Maize | nucleus | 5.17 | 0.65 |
| CDY50300 | Canola | nucleus | 3.45 | 0.61 |
| CDX96251 | Canola | nucleus | 3.45 | 0.61 |
| CDX81606 | Canola | nucleus | 3.45 | 0.6 |
| CDY47812 | Canola | nucleus | 5.17 | 0.58 |
| CDY22356 | Canola | nucleus | 5.17 | 0.58 |
| CDY03914 | Canola | nucleus | 3.45 | 0.54 |
| CDY15712 | Canola | nucleus | 3.45 | 0.53 |
| CDY32959 | Canola | nucleus | 3.45 | 0.51 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 3.45 | 0.48 |
| CDY69014 | Canola | nucleus | 1.72 | 0.31 |
| CDY43604 | Canola | nucleus | 1.72 | 0.26 |
| TraesCS4D01G332700.1 | Wheat | nucleus | 0.0 | 0.0 |
| Os01t0922600-01 | Rice | nucleus | 0.0 | 0.0 |
| HORVU5Hr1G076380.9 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX80286 | EnsemblPlantsGene:GSBRNA2T00133285001 | ProteinID:CDX80286 | ProteinID:CDX80286.1 | SEG:seg | UniParc:UPI0004EF34EF |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC09g34560D
Coordinates
chrLK031820:+:1212487..1212745
Molecular Weight (calculated)
6827.8 Da
IEP (calculated)
4.482
GRAVY (calculated)
-1.521
Length
58 amino acids
Sequence
(BLAST)
(BLAST)
1: MEKSQRWSYV KDKAIVSNLA EQEWENSMDG EEEDVGDEDK RKRVMERARG TNTDRVPP
001: MEGQRTQRRG YLKDKATVSN LVEEEMENGM DGEEEDGGDE DKRKKVMERV RGPSTDRVPS RLCQVDRCTV NLTEAKQYYR RHRVCEVHAK ASAATVAGVR
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
Arabidopsis Description
SPL5SPL5 [Source:UniProtKB/TrEMBL;Acc:A0A178VL13]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.