Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G286000.1 | Wheat | nucleus | 97.92 | 97.69 |
| TraesCS5A01G286700.2 | Wheat | nucleus | 97.92 | 97.02 |
| HORVU5Hr1G076380.9 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 68.52 | 75.51 |
| Zm00001d006091_P001 | Maize | nucleus | 67.36 | 68.79 |
| EER97011 | Sorghum | nucleus | 72.69 | 67.67 |
| Zm00001d021056_P001 | Maize | nucleus | 71.3 | 66.24 |
| Os09t0507100-00 | Rice | nucleus | 70.83 | 64.83 |
| TraesCS7D01G261500.1 | Wheat | nucleus | 59.95 | 62.56 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 36.11 | 48.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.35 | 48.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.35 | 48.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.44 | 48.12 |
| TraesCS4D01G332700.1 | Wheat | nucleus | 22.69 | 44.75 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 41.44 | 43.34 |
| GSMUA_Achr11P... | Banana | nucleus | 39.35 | 40.96 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 33.33 | 40.0 |
| VIT_14s0068g01780.t01 | Wine grape | nucleus | 31.25 | 35.71 |
| TraesCS3D01G425800.1 | Wheat | nucleus | 33.1 | 34.13 |
| KRG94562 | Soybean | nucleus | 28.24 | 33.42 |
| KRH06918 | Soybean | nucleus | 28.24 | 33.42 |
| TraesCS2D01G232800.1 | Wheat | nucleus | 14.81 | 33.33 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 20.6 | 27.38 |
| TraesCS7D01G482300.1 | Wheat | nucleus | 18.98 | 25.87 |
| TraesCS2D01G410700.1 | Wheat | nucleus | 19.44 | 23.66 |
| TraesCS2D01G502900.2 | Wheat | nucleus | 20.83 | 22.11 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 20.6 | 21.81 |
| TraesCS7D01G482400.1 | Wheat | nucleus | 19.44 | 21.65 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 19.21 | 21.56 |
| TraesCS7D01G482500.1 | Wheat | nucleus | 20.6 | 21.39 |
| TraesCS7D01G482200.1 | Wheat | nucleus | 19.91 | 21.08 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 22.22 | 20.3 |
| TraesCS6D01G142100.1 | Wheat | nucleus | 19.68 | 18.81 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.16 | 8.62 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G294400.1 | EnsemblPlantsGene:TraesCS5D01G294400 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF33 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr5D:+:391373261..391378592
Molecular Weight (calculated)
45255.9 Da
IEP (calculated)
7.283
GRAVY (calculated)
-0.373
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWDLKMPGS WDLAELEHDG VPAMVAPAAA GITAAAARGP PGRPECSVDL KLGGLGEFGP AADGAMKQQP PVATAAANGP AASLSASASN AAAVVPSASP
101: LKRPRPGAGG GAGAGHCPSC AVDGCKADLS KCRDYHRRHK VCEAHSKTPL VVVAGREMRF CQQCSRFHLL AEFDEAKRSC RKRLDGHNRR RRKPQVDSMN
201: SGSFMTTQQG LYSNAGTRFA SFSAPRPEPS WSGIIKSEDS NPYYTSTHQI NFAGSSSSYS KEGRRFPFLH EGDQMSFSTG ATALEIPPVC QPLLKAVAPP
301: PPPPESSSSN KMFSDGQLTH VLDSDCALSL LSSPANSSSV DVSRMVRPSE HIPSVPNLQQ FGSSSWFACS QASSAATGFA AFAGGMDGEQ LNACGALVPS
401: SNDNEMNCHG IFHVGADGSS EGTSPSLPFS WQ
101: LKRPRPGAGG GAGAGHCPSC AVDGCKADLS KCRDYHRRHK VCEAHSKTPL VVVAGREMRF CQQCSRFHLL AEFDEAKRSC RKRLDGHNRR RRKPQVDSMN
201: SGSFMTTQQG LYSNAGTRFA SFSAPRPEPS WSGIIKSEDS NPYYTSTHQI NFAGSSSSYS KEGRRFPFLH EGDQMSFSTG ATALEIPPVC QPLLKAVAPP
301: PPPPESSSSN KMFSDGQLTH VLDSDCALSL LSSPANSSSV DVSRMVRPSE HIPSVPNLQQ FGSSSWFACS QASSAATGFA AFAGGMDGEQ LNACGALVPS
401: SNDNEMNCHG IFHVGADGSS EGTSPSLPFS WQ
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.