Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G432500.1 | Wheat | nucleus | 96.18 | 97.11 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 95.23 | 96.38 |
| HORVU3Hr1G094730.2 | Barley | nucleus | 92.12 | 89.98 |
| Os01t0922600-01 | Rice | nucleus | 47.73 | 64.31 |
| EES01979 | Sorghum | nucleus | 60.38 | 62.78 |
| Zm00001d042319_P001 | Maize | nucleus | 59.19 | 60.64 |
| Zm00001d012015_P001 | Maize | nucleus | 53.7 | 60.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.55 | 36.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.59 | 35.43 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 26.49 | 34.8 |
| TraesCS7D01G261500.1 | Wheat | nucleus | 34.37 | 34.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.79 | 34.68 |
| TraesCS2D01G232800.1 | Wheat | nucleus | 15.75 | 34.38 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 32.7 | 33.17 |
| TraesCS5D01G294400.1 | Wheat | nucleus | 34.13 | 33.1 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 28.16 | 32.78 |
| VIT_14s0068g01780.t01 | Wine grape | nucleus | 29.36 | 32.54 |
| KRH06918 | Soybean | nucleus | 25.78 | 29.59 |
| KRG94562 | Soybean | nucleus | 25.3 | 29.04 |
| GSMUA_Achr11P... | Banana | nucleus | 28.16 | 28.43 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 20.29 | 26.15 |
| TraesCS2D01G410700.1 | Wheat | nucleus | 21.72 | 25.63 |
| TraesCS7D01G482300.1 | Wheat | nucleus | 19.09 | 25.24 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 21.48 | 23.38 |
| TraesCS7D01G482400.1 | Wheat | nucleus | 20.05 | 21.65 |
| TraesCS5D01G273900.2 | Wheat | nucleus | 21.0 | 21.57 |
| TraesCS7D01G482500.1 | Wheat | nucleus | 21.0 | 21.15 |
| TraesCS2D01G502900.2 | Wheat | nucleus | 20.29 | 20.88 |
| TraesCS7D01G482200.1 | Wheat | nucleus | 19.57 | 20.1 |
| TraesCS6D01G142100.1 | Wheat | nucleus | 19.33 | 17.92 |
| TraesCS4D01G332700.1 | Wheat | nucleus | 9.31 | 17.81 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 20.05 | 17.76 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.72 | 5.17 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G425800.1 | EnsemblPlantsGene:TraesCS3D01G425800 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF63 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr3D:+:538401064..538404375
Molecular Weight (calculated)
44185.4 Da
IEP (calculated)
8.792
GRAVY (calculated)
-0.529
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSWEHKMPS WDLGTVVAPS GGGGGGGGGG GALDLKLGAP TSWRPVPAAA AAAAAVVSVQ QQQHPPSAVA APAKRARAGQ GQQTVPPCSV EGCTADLSRC
101: REYHRRHKVC EAHSKTPVVA VAGQQQRFCQ QCSRFHLLGE FDEVKRSCRK RLDGHNRRRR KPQPDPLNPA GLFANHHGVT RFASYPQIFS PTSMAEPKWP
201: GGIAVKTEAD AFHEQYYSFS GAASLFHHGK RERKHFPFLT DGGGEAAFGC QPPAFTITPS SESSSNSSRH SNGKTTMFAH DGGPDHNCAL SLLSDSPAPA
301: HIMVPAEQAH HLGGGGVTIQ YGGGGKVARL SSNGDVSLTG LSYVSLGDKG APMLHASNRS QHAAATATTA VTTSTEAAPA ASQLQQQYHG YYHHQHQVSA
401: DQGNHPDAGG MHALPFSSW
101: REYHRRHKVC EAHSKTPVVA VAGQQQRFCQ QCSRFHLLGE FDEVKRSCRK RLDGHNRRRR KPQPDPLNPA GLFANHHGVT RFASYPQIFS PTSMAEPKWP
201: GGIAVKTEAD AFHEQYYSFS GAASLFHHGK RERKHFPFLT DGGGEAAFGC QPPAFTITPS SESSSNSSRH SNGKTTMFAH DGGPDHNCAL SLLSDSPAPA
301: HIMVPAEQAH HLGGGGVTIQ YGGGGKVARL SSNGDVSLTG LSYVSLGDKG APMLHASNRS QHAAATATTA VTTSTEAAPA ASQLQQQYHG YYHHQHQVSA
401: DQGNHPDAGG MHALPFSSW
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.