Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01979 | Sorghum | nucleus | 85.82 | 87.1 |
| Zm00001d012015_P001 | Maize | nucleus | 76.04 | 82.93 |
| Os01t0922600-01 | Rice | nucleus | 48.17 | 63.34 |
| TraesCS3A01G432500.1 | Wheat | nucleus | 60.39 | 59.52 |
| TraesCS3D01G425800.1 | Wheat | nucleus | 60.64 | 59.19 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 59.66 | 58.94 |
| HORVU3Hr1G094730.2 | Barley | nucleus | 59.41 | 56.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.27 | 37.39 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 28.85 | 36.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.54 | 36.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.27 | 35.48 |
| Zm00001d006091_P001 | Maize | nucleus | 34.72 | 33.57 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 32.27 | 31.96 |
| Zm00001d021056_P001 | Maize | nucleus | 35.45 | 31.18 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 27.38 | 31.11 |
| Zm00001d049822_P001 | Maize | nucleus | 32.52 | 30.79 |
| Zm00001d049824_P002 | Maize | nucleus | 32.52 | 30.57 |
| KRH06918 | Soybean | nucleus | 26.89 | 30.14 |
| KRG94562 | Soybean | nucleus | 26.89 | 30.14 |
| GSMUA_Achr11P... | Banana | nucleus | 30.07 | 29.64 |
| VIT_14s0068g01780.t01 | Wine grape | nucleus | 25.92 | 28.04 |
| Zm00001d021573_P001 | Maize | mitochondrion | 13.94 | 27.67 |
| Zm00001d015410_P002 | Maize | nucleus | 21.52 | 26.51 |
| Zm00001d053775_P001 | Maize | nucleus | 21.27 | 26.28 |
| Zm00001d006451_P001 | Maize | mitochondrion | 15.65 | 25.2 |
| Zm00001d020941_P001 | Maize | nucleus | 21.52 | 23.28 |
| Zm00001d006028_P001 | Maize | nucleus | 21.27 | 22.72 |
| Zm00001d026175_P001 | Maize | nucleus | 21.27 | 21.8 |
| Zm00001d052890_P001 | Maize | nucleus | 21.27 | 21.32 |
| Zm00001d031451_P001 | Maize | nucleus | 20.78 | 21.09 |
| Zm00001d002005_P001 | Maize | nucleus | 20.29 | 20.8 |
| Zm00001d014698_P001 | Maize | nucleus | 22.0 | 20.5 |
| Zm00001d026491_P001 | Maize | nucleus | 19.56 | 20.2 |
| Zm00001d036692_P001 | Maize | nucleus | 20.54 | 19.35 |
| Zm00001d046906_P001 | Maize | nucleus | 19.8 | 19.1 |
| Zm00001d053756_P001 | Maize | nucleus | 18.58 | 18.72 |
| Zm00001d053890_P003 | Maize | nucleus | 21.76 | 18.46 |
| Zm00001d015451_P001 | Maize | nucleus | 19.56 | 18.14 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 21.27 | 16.38 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.73 | 5.17 |
Protein Annotations
| EntrezGene:103650833 | MapMan:15.5.18 | Gene3D:4.10.1100.10 | UniProt:A0A1D6N2V6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | ProteinID:ONM35039.1 | PFAM:PF03110 | PFscan:PS51141 |
| PANTHER:PTHR31251 | PANTHER:PTHR31251:SF63 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004DEAD6D |
| EnsemblPlantsGene:Zm00001d042319 | EnsemblPlants:Zm00001d042319_P001 | EnsemblPlants:Zm00001d042319_T001 | SEG:seg | : | : |
Description
SBP-transcription factor 22Squamosa promoter-binding-like protein 6
Coordinates
chr3:-:161006234..161009799
Molecular Weight (calculated)
42525.8 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.411
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWDAKMLPA WDLGTVVGPS SSGGGALDLK LGAPTSSRAV LTAAAGAAPA LPSANPPPPP PPPSSSAPAK RPRPGLARQA VPACSVQGCD ADLSRCRDYH
101: RRHKVCEAHS KTPVVTVAGQ QQRFCQQCSR FHLLGEFDEV KRSCRKRLDG HNRRRRKPQP DPLNPAGLFG NHHGVTRFTS YPQLFAASME QPKWSVVKTE
201: ADVFQDQYYP AVHLNGAGGG AIGSHFHGKE QKHFPFLTSH SNGGGGGDVA TAAALGCQPF TITTTASSES DSKQSNGNCA LSLLSDNPTS AQTAMIPTTA
301: QSLAAAMQYG GRLPGSVSVS GGGGGDVSLT GMSYMRVGDS RQASILTASS PGHAAVASPV PATTAAATPP PPPQLLQYHH GYGYYHVSGG EQGNNPDGAA
401: VHALPFSSW
101: RRHKVCEAHS KTPVVTVAGQ QQRFCQQCSR FHLLGEFDEV KRSCRKRLDG HNRRRRKPQP DPLNPAGLFG NHHGVTRFTS YPQLFAASME QPKWSVVKTE
201: ADVFQDQYYP AVHLNGAGGG AIGSHFHGKE QKHFPFLTSH SNGGGGGDVA TAAALGCQPF TITTTASSES DSKQSNGNCA LSLLSDNPTS AQTAMIPTTA
301: QSLAAAMQYG GRLPGSVSVS GGGGGDVSLT GMSYMRVGDS RQASILTASS PGHAAVASPV PATTAAATPP PPPQLLQYHH GYGYYHVSGG EQGNNPDGAA
401: VHALPFSSW
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.