CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012015_P001	Maize	nucleus	79.9	85.87
Zm00001d042319_P001	Maize	nucleus	87.1	85.82
Os01t0922600-01	Rice	nucleus	48.88	63.34
TraesCS3A01G432500.1	Wheat	nucleus	62.53	60.72
TraesCS3D01G425800.1	Wheat	nucleus	62.78	60.38
TraesCS3B01G468400.1	Wheat	nucleus	61.54	59.9
HORVU3Hr1G094730.2	Barley	nucleus	61.54	57.81
GSMUA_AchrUn_...	Banana	nucleus	33.75	38.53
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	30.02	37.93
GSMUA_AchrUn_...	Banana	nucleus	32.26	37.14
GSMUA_AchrUn_...	Banana	nucleus	33.75	36.56
GSMUA_Achr5P25090_001	Banana	nucleus	34.24	33.41
EER97011	Sorghum	nucleus	37.72	32.76
GSMUA_Achr4P16050_001	Banana	nucleus	29.03	32.5
KXG25534	Sorghum	nucleus	36.72	32.46
GSMUA_Achr11P...	Banana	nucleus	32.01	31.08
KRG94562	Soybean	nucleus	27.79	30.68
KRH06918	Soybean	nucleus	27.79	30.68
EER97257	Sorghum	nucleus	16.13	30.23
VIT_14s0068g01780.t01	Wine grape	nucleus	28.29	30.16
KXG36284	Sorghum	nucleus	14.64	27.06
EES04609	Sorghum	nucleus	20.84	24.93
EES11232	Sorghum	nucleus	24.57	23.68
EES14266	Sorghum	nucleus	23.82	23.47
EER99092	Sorghum	nucleus	21.34	22.16
EES11579	Sorghum	nucleus	20.84	21.0
OQU77017	Sorghum	nucleus	22.08	20.23
OQU84482	Sorghum	nucleus	20.84	18.88
EER88765	Sorghum	nucleus	19.35	17.57
EES04495	Sorghum	nucleus	20.6	17.29
CDX80286	Canola	cytosol, nucleus, plasma membrane	0.99	6.9

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:8079806	UniProt:C5XGC0	EnsemblPlants:EES01979	ProteinID:EES01979
ProteinID:EES01979.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF63	InterPro:SBP_dom	InterPro:SBP_sf
EnsemblPlantsGene:SORBI_3003G406600	SUPFAM:SSF103612	unigene:Sbi.7301	UniParc:UPI0001A85192	RefSeq:XP_002456859.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:71419053..71424347

Molecular Weight (calculated)

42125.3 Da

IEP (calculated)

8.942

GRAVY (calculated)

-0.457

Length

403 amino acids

Sequence
(BLAST)

001: MDWDAKMLPA WDLGTVVGPS SSGGVGVGGG GALDLKLGAP TSSRVVATAA AAVGAAPTLP SANHPPPPAP APAPAPSSSA PAKRPRPGHA QQAVPACSVQ
101: GCDADLSRCR DYHRRHKVCE AHSKTPVVTV AGQQQRFCQQ CSRFHLLGEF DEVKRSCRKR LDGHNRRRRK PQPDPLNPAG LFGNHHGVTR FTSYPQLFTT
201: SMAEPKWSVV KTETDVFQDQ YYPAVHLDGA GAGSLFHGKD RKHFPFLTNH NNGGGDVAAA ALGCQPFTIT TTASSESSSK QSNGNCALSL LSDNPTPAQT
301: AMIPTAQPLG PAMQYGRLPG SGGGSGDVSL TGMSYMRVAD SRQASMLTTS SPSHTAVASP GPATAAATQH QLQYHHGYYH VSGGEQGNNP DGAAIQALPF
401: SSW

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.