CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002005_P001	Maize	nucleus	88.5	88.72
Os04t0656500-01	Rice	nucleus	80.75	77.64
TraesCS2B01G530400.1	Wheat	nucleus	74.75	73.28
TraesCS2D01G502900.2	Wheat	nucleus	74.25	72.97
TraesCS2A01G502300.1	Wheat	nucleus	73.5	71.36
HORVU2Hr1G111620.1	Barley	cytosol, nucleus	10.25	64.06
Bra032662.1-P	Field mustard	nucleus	18.0	45.57
GSMUA_Achr10P...	Banana	nucleus	20.75	36.4
GSMUA_Achr3P00810_001	Banana	nucleus	21.0	32.94
EER97257	Sorghum	nucleus	16.75	31.16
GSMUA_Achr7P05010_001	Banana	nucleus	21.0	30.66
VIT_15s0021g02300.t01	Wine grape	nucleus	23.0	30.26
GSMUA_Achr4P20590_001	Banana	nucleus	20.5	30.15
CDX90071	Canola	nucleus	23.25	29.81
KRH75288	Soybean	nucleus	21.0	29.27
Bra033221.1-P	Field mustard	nucleus	23.75	28.96
CDY38043	Canola	nucleus	24.0	28.66
KRH66611	Soybean	nucleus	24.0	28.57
Solyc01g090730.2.1	Tomato	nucleus	21.25	28.43
PGSC0003DMT400074976	Potato	nucleus	20.75	28.33
PGSC0003DMT400066955	Potato	nucleus	21.25	28.15
KRH48747	Soybean	nucleus	23.75	28.11
Solyc10g018780.1.1	Tomato	nucleus	20.5	27.99
AT1G02065.1	Thale cress	nucleus	23.25	27.93
CDY15132	Canola	nucleus	16.0	27.47
GSMUA_Achr7P08750_001	Banana	nucleus	23.75	26.84
KXG36284	Sorghum	nucleus	14.5	26.61
EES04609	Sorghum	nucleus	20.5	24.33
KRH07602	Soybean	nucleus	13.0	24.07
EER88765	Sorghum	nucleus	26.5	23.87
EER99092	Sorghum	nucleus	21.5	22.16
EES14266	Sorghum	nucleus	22.25	21.76
OQU84482	Sorghum	nucleus	23.5	21.12
EES01979	Sorghum	nucleus	21.0	20.84
EES11232	Sorghum	nucleus	20.5	19.62
EER97011	Sorghum	nucleus	22.25	19.18
KXG25534	Sorghum	nucleus	21.75	19.08
EES04495	Sorghum	nucleus	22.25	18.54
OQU77017	Sorghum	nucleus	19.5	17.73

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:8079612	UniProt:C5Y9I5	EnsemblPlants:EES11579	ProteinID:EES11579
ProteinID:EES11579.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF17	InterPro:SBP_dom	InterPro:SBP_sf
EnsemblPlantsGene:SORBI_3006G247700	SUPFAM:SSF103612	UniParc:UPI0001A871E6	RefSeq:XP_002447251.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:58721790..58726362

Molecular Weight (calculated)

43510.4 Da

IEP (calculated)

7.831

GRAVY (calculated)

-0.699

Length

400 amino acids

Sequence
(BLAST)

001: MMNLSAAANA ACDEFPYVPS NAGAAPPSLL PIMDQENSIQ REHHHQLGYN LEANSLALLP PSNAAAAHHH HHHATTIAGH SPHDILQFYP ASASHYLASG
101: GGGGNPYSHF GSAGTGSTFH QSSYYPPAAP EYYFPTLVSS AEENMASFAA TQLGLNLNYR TYFPPRGGYT YGHHPPRCQA EGCKADLSSA KRYHRRHKVC
201: EHHSKAPVVV TAGGLHQRFC QQCSRFHLLD EFDDAKKSCR KRLADHNRRR RKSKPSDADA GDKKRAHGNK AAAAKDKAGS SSKNMDIGDG LGTQILGSAL
301: LSKEQDQAMD LGEVVKEAVD PKGKASMQQH HGIHQQHHGF PFHSSSAGSC FPQTQAVSSD TTSNIAQVQE PSLGFHHQHH HQHSNILQLG QAMFDLDFDH

Best Arabidopsis Sequence Match ( AT1G02065.1 )
(BLAST)

001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG

Arabidopsis Description

SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.