Factsheet for Os04t0656500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 17594063

gfp PMID: 17594063 doi

J Lee, JJ Park, SL Kim, J Yim, G An

National Research Laboratory of Plant Functional Genomics, Division of Molecular and Life Sciences, Pohang University of Science and Technology, Hyo-ja dong, Pohang, Kyungbuk 790-784, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11579	Sorghum	nucleus	77.64	80.75
Zm00001d002005_P001	Maize	nucleus	73.32	76.44
TraesCS2B01G530400.1	Wheat	nucleus	74.76	76.23
TraesCS2D01G502900.2	Wheat	nucleus	74.04	75.68
TraesCS2A01G502300.1	Wheat	nucleus	73.8	74.51
HORVU2Hr1G111620.1	Barley	cytosol, nucleus	10.58	68.75
Bra032662.1-P	Field mustard	nucleus	16.83	44.3
GSMUA_Achr10P...	Banana	nucleus	19.95	36.4
GSMUA_Achr3P00810_001	Banana	nucleus	20.19	32.94
GSMUA_Achr7P05010_001	Banana	nucleus	20.43	31.02
VIT_15s0021g02300.t01	Wine grape	nucleus	22.36	30.59
Os07t0505200-01	Rice	nucleus	15.87	30.56
GSMUA_Achr4P20590_001	Banana	nucleus	19.95	30.51
CDX90071	Canola	nucleus	22.6	30.13
KRH75288	Soybean	nucleus	20.67	29.97
PGSC0003DMT400074976	Potato	nucleus	20.67	29.35
Bra033221.1-P	Field mustard	nucleus	23.08	29.27
KRH66611	Soybean	nucleus	23.56	29.17
Solyc10g018780.1.1	Tomato	nucleus	20.43	29.01
CDY15132	Canola	nucleus	16.11	28.76
KRH48747	Soybean	nucleus	23.32	28.7
CDY38043	Canola	nucleus	22.84	28.36
AT1G02065.1	Thale cress	nucleus	22.6	28.23
Solyc01g090730.2.1	Tomato	nucleus	20.19	28.09
PGSC0003DMT400066955	Potato	nucleus	20.19	27.81
Os02t0139400-01	Rice	nucleus	18.03	26.6
GSMUA_Achr7P08750_001	Banana	nucleus	22.6	26.55
Os06t0659100-00	Rice	nucleus	26.44	25.82
Os02t0174100-02	Rice	nucleus	15.14	25.1
Os09t0491532-01	Rice	nucleus	19.23	24.77
KRH07602	Soybean	nucleus	12.26	23.61
Os08t0509600-01	Rice	nucleus	23.32	23.26
Os04t0551500-01	Rice	nucleus	19.23	22.22
Os02t0177300-00	Rice	nucleus	25.0	22.22
Os01t0922600-01	Rice	nucleus	15.14	20.26
Os09t0507100-00	Rice	nucleus	22.6	19.92
Os06t0663500-00	Rice	nucleus	16.35	19.83
Os06t0703500-02	Rice	nucleus	22.12	19.37
Os08t0531600-01	Rice	nucleus	20.19	18.46

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:4337258	EMBL:AK068104	ProteinID:BAF16033.1	ProteinID:BAS91410.1
ProteinID:CAE03411.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EnsemblPlantsGene:Os04g0656500	EnsemblPlants:Os04t0656500-01	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF17	UniProt:Q7XPY1	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI00001B1DC7
RefSeq:XP_015634037.1	SEG:seg	:	:	:	:

Description

LIGULELESS 1Similar to Squamosa-promoter binding-like protein 3. (Os04t0656500-01)

Coordinates

chr4:+:33488722..33492700

Molecular Weight (calculated)

45032.0 Da

IEP (calculated)

7.646

GRAVY (calculated)

-0.766

Length

416 amino acids

Sequence
(BLAST)

001: MMNVPSAAAA SSCDDFGYNA TPPPPPSLLP IMDQDGGGGS IQRDHHQHHN HQQLGYNLEP SSLALLPPSN AAAAAAHHAT IAHASPHDLL QFYPTSHYLA
101: AAGGAGGGGN PYSHFTAAAA AGSTFQSYYQ QPPQDAPEYY FPTLVSSAEE NMASFAATQL GLNLGYRTYF PPRGGYTYGH HPPRCQAEGC KADLSSAKRY
201: HRRHKVCEHH SKAPVVVTAG GLHQRFCQQC SRFHLLDEFD DAKKSCRKRL ADHNRRRRKS KPSDGEHSGE KRRAQANKSA ATKDKAGSSS KNAGIGDGFE
301: TQLLGGAHMS KDQDQAMDLG EVVKEAVDPK GKASMQQQQQ QAHHGIHQQS HQQHGFPFPS SSGSCLFPQS QGAVSSTDTS NIAQVQEPSL AFHQQHHQHS
401: NILQLGQAMF DLDFDH

Best Arabidopsis Sequence Match ( AT1G02065.1 )
(BLAST)

001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG

Arabidopsis Description

SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.