Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU84482 | Sorghum | nucleus | 55.77 | 58.65 |
| Zm00001d015451_P001 | Maize | nucleus | 54.7 | 58.05 |
| TraesCS6B01G180300.1 | Wheat | nucleus | 49.79 | 52.71 |
| TraesCS6D01G142100.1 | Wheat | nucleus | 50.64 | 52.43 |
| TraesCS6A01G152000.1 | Wheat | nucleus | 50.0 | 52.23 |
| Zm00001d053756_P001 | Maize | nucleus | 43.38 | 50.0 |
| Os06t0659100-00 | Rice | nucleus | 44.23 | 48.59 |
| HORVU6Hr1G030490.2 | Barley | nucleus, plastid | 49.79 | 47.45 |
| Bra032662.1-P | Field mustard | nucleus | 13.68 | 40.51 |
| GSMUA_Achr10P... | Banana | nucleus | 18.8 | 38.6 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 21.37 | 36.76 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 21.37 | 36.5 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 19.87 | 36.47 |
| Os07t0505200-01 | Rice | nucleus | 14.53 | 31.48 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 20.3 | 31.25 |
| CDX90071 | Canola | nucleus | 20.73 | 31.09 |
| Bra033221.1-P | Field mustard | nucleus | 21.58 | 30.79 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 23.29 | 30.79 |
| Solyc10g018780.1.1 | Tomato | nucleus | 19.23 | 30.72 |
| PGSC0003DMT400074976 | Potato | nucleus | 19.23 | 30.72 |
| KRH75288 | Soybean | nucleus | 18.8 | 30.66 |
| CDY15132 | Canola | nucleus | 15.17 | 30.47 |
| KRH66611 | Soybean | nucleus | 21.79 | 30.36 |
| KRH48747 | Soybean | nucleus | 21.58 | 29.88 |
| PGSC0003DMT400066955 | Potato | nucleus | 19.23 | 29.8 |
| AT1G02065.1 | Thale cress | nucleus | 20.73 | 29.13 |
| Solyc01g090730.2.1 | Tomato | nucleus | 18.59 | 29.1 |
| KRH07602 | Soybean | nucleus | 13.25 | 28.7 |
| CDY38043 | Canola | nucleus | 20.51 | 28.66 |
| Os04t0656500-01 | Rice | nucleus | 22.22 | 25.0 |
| Os02t0139400-01 | Rice | nucleus | 14.96 | 24.82 |
| Os02t0174100-02 | Rice | nucleus | 12.39 | 23.11 |
| Os04t0551500-01 | Rice | nucleus | 17.09 | 22.22 |
| Os01t0922600-01 | Rice | nucleus | 14.1 | 21.22 |
| Os09t0491532-01 | Rice | nucleus | 13.89 | 20.12 |
| Os08t0509600-01 | Rice | nucleus | 16.67 | 18.7 |
| Os06t0663500-00 | Rice | nucleus | 13.68 | 18.66 |
| Os08t0531600-01 | Rice | nucleus | 17.95 | 18.46 |
| Os09t0507100-00 | Rice | nucleus | 18.59 | 18.43 |
| Os06t0703500-02 | Rice | nucleus | 17.31 | 17.05 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | ProteinID:BAD27984.1 | ProteinID:BAF07980.2 | ProteinID:BAS77264.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | EnsemblPlantsGene:Os02g0177300 |
| EnsemblPlants:Os02t0177300-00 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF26 | UniProt:Q0E3F8 |
| InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0000DF05A3 | SEG:seg | : |
Description
RICE SQUAMOSA PROMOTER-BINDING-LIKE 5Squamosa-promoter binding protein 1. (Os02t0177300-00)
Coordinates
chr2:+:4247435..4251025
Molecular Weight (calculated)
49134.6 Da
IEP (calculated)
6.837
GRAVY (calculated)
-0.438
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSRLNAGA MAVPAAAVAA DVVDFGYAAP MPPPYVGFDP AGMGGERQLF QHGGACHGLY DGGLDFSAAA AFQEAATLGV GLPGGNLLQS LAPPAAAAAT
101: PSSLQMPMMM SLPGLPATAA DVYPFGGGGF VKREDGPVLD VVGGGGGGRI GLNLGRRTYF SPADVLAVDR LLLRSRLGGM GMEMGMGMGV LGLGLAAAAH
201: HHQPPRCQAE GCKADLSAAK HYHRRHKVCD FHAKAAAVLA AGKQQRFCQQ CSRFHVLAEF DEAKRSCRKR LTEHNRRRRK PTAGGQSSKD SPPPPPSKKG
301: TDASIASSYT SCDHHKAAAS TTTASGVSCL QELADHHDVG GGHQAAMAAA PPPTLSLAAL PPQEEDDEDE DGGLGNVLMM QQHHQRRRLQ HDGDGDDDVA
401: AAAAHHHLMR SLARQQQQHR HSSGCSNNND GDDDDHNNNN NILSCSSASD QQNSSNNNNM HFFEVDFI
101: PSSLQMPMMM SLPGLPATAA DVYPFGGGGF VKREDGPVLD VVGGGGGGRI GLNLGRRTYF SPADVLAVDR LLLRSRLGGM GMEMGMGMGV LGLGLAAAAH
201: HHQPPRCQAE GCKADLSAAK HYHRRHKVCD FHAKAAAVLA AGKQQRFCQQ CSRFHVLAEF DEAKRSCRKR LTEHNRRRRK PTAGGQSSKD SPPPPPSKKG
301: TDASIASSYT SCDHHKAAAS TTTASGVSCL QELADHHDVG GGHQAAMAAA PPPTLSLAAL PPQEEDDEDE DGGLGNVLMM QQHHQRRRLQ HDGDGDDDVA
401: AAAAHHHLMR SLARQQQQHR HSSGCSNNND GDDDDHNNNN NILSCSSASD QQNSSNNNNM HFFEVDFI
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.