Factsheet for Os09t0507100-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G286000.1	Wheat	nucleus	65.47	71.36
TraesCS5D01G294400.1	Wheat	nucleus	64.83	70.83
TraesCS5A01G286700.2	Wheat	nucleus	65.25	70.64
Zm00001d006091_P001	Maize	nucleus	62.5	69.74
EER97011	Sorghum	nucleus	64.62	65.73
Zm00001d021056_P001	Maize	nucleus	64.41	65.38
HORVU5Hr1G076380.9	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	50.42	60.71
Os08t0531600-01	Rice	nucleus	56.57	58.68
GSMUA_AchrUn_...	Banana	nucleus	37.29	50.29
GSMUA_AchrUn_...	Banana	nucleus	36.23	48.44
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	32.63	48.28
GSMUA_AchrUn_...	Banana	nucleus	37.5	47.58
GSMUA_Achr5P25090_001	Banana	nucleus	38.35	43.83
GSMUA_Achr4P16050_001	Banana	nucleus	30.72	40.28
GSMUA_Achr11P...	Banana	nucleus	34.75	39.52
VIT_14s0068g01780.t01	Wine grape	nucleus	29.45	36.77
Os01t0922600-01	Rice	nucleus	23.52	35.69
KRG94562	Soybean	nucleus	26.69	34.52
KRH06918	Soybean	nucleus	26.27	33.97
Os07t0505200-01	Rice	nucleus	14.41	31.48
Os02t0174100-02	Rice	nucleus	16.53	31.08
Os02t0139400-01	Rice	nucleus	16.74	28.01
Os06t0663500-00	Rice	nucleus	16.95	23.32
Os04t0656500-01	Rice	nucleus	19.92	22.6
Os09t0491532-01	Rice	nucleus	15.25	22.29
Os04t0551500-01	Rice	nucleus	16.74	21.94
Os06t0659100-00	Rice	nucleus	19.49	21.6
Os08t0509600-01	Rice	nucleus	19.07	21.58
Os06t0703500-02	Rice	nucleus	20.76	20.63
Os02t0177300-00	Rice	nucleus	18.43	18.59
CDX80286	Canola	cytosol, nucleus, plasma membrane	1.06	8.62

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EntrezGene:4347516	ProteinID:BAF25526.1	ProteinID:BAT08871.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	EnsemblPlantsGene:Os09g0507100
EnsemblPlants:Os09t0507100-00	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF33	UniProt:Q0J0K1
InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0000DD97F6	RefSeq:XP_015610874.1	SEG:seg

Description

RICE SQUAMOSA PROMOTER-BINDING-LIKE 18Similar to Squamosa-promoter binding-like protein 11. (Os09t0507100-00)

Coordinates

chr9:+:19643463..19648233

Molecular Weight (calculated)

49648.8 Da

IEP (calculated)

7.562

GRAVY (calculated)

-0.480

Length

472 amino acids

Sequence
(BLAST)

001: MDWDLKMPVS WDLAELEHNA VPNMAAAASA AEPGIAAVAA SRGAPGRPEC SVDLKLGGLG EFGAADALKE PAAAAKAPVS SAAAAASVAK VPPSTSTLKR
101: PRGGGGGGGG QCPSCAVDGC KADLSKHRDY HRRHKVCEPH SKTPVVVVSG REMRFCQQCS RFHLLGEFDE AKRSCRKRLD GHNRRRRKPQ ADSMSSGSFM
201: TSQQGTRFAS FTPPRPEPSW PGIIKSEETP YYSHHHHPHP VMTSRQPHFV GSPSSATTAA FSPKEGRRFP FLHEGDQISF GGGGGAAAAA TLEISVCQTT
301: VVAPPPPESS SSNKMFSSDG LTTATTTTTT AHHHHHHHQV LDSDCALSLL SSPANSSSVD VSRMVQPSPA AAAGAEHHHH HQIPMAQPLV PNLQQQFGGS
401: SPWFASSPAA AAVAGGGFAC PSMDSEQQQQ QQLNAVLVPG SNENEMNYHG MFHVGGEGSS DGTSPSLPFS WQ

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.