Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006091_P001 | Maize | nucleus | 82.76 | 90.78 |
| Zm00001d021056_P001 | Maize | nucleus | 85.78 | 85.59 |
| TraesCS5B01G286000.1 | Wheat | nucleus | 68.1 | 72.98 |
| TraesCS5D01G294400.1 | Wheat | nucleus | 67.67 | 72.69 |
| TraesCS5A01G286700.2 | Wheat | nucleus | 67.46 | 71.79 |
| Os09t0507100-00 | Rice | nucleus | 65.73 | 64.62 |
| HORVU5Hr1G076380.9 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 53.23 | 63.01 |
| KXG25534 | Sorghum | nucleus | 59.7 | 60.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.09 | 53.14 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 35.78 | 52.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.01 | 51.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.3 | 50.27 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 39.87 | 44.79 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 33.62 | 43.33 |
| GSMUA_Achr11P... | Banana | nucleus | 37.93 | 42.41 |
| EES01979 | Sorghum | nucleus | 32.76 | 37.72 |
| VIT_14s0068g01780.t01 | Wine grape | nucleus | 29.96 | 36.77 |
| KRG94562 | Soybean | nucleus | 27.59 | 35.07 |
| KRH06918 | Soybean | nucleus | 27.16 | 34.52 |
| EER97257 | Sorghum | nucleus | 14.01 | 30.23 |
| KXG36284 | Sorghum | nucleus | 13.58 | 28.9 |
| EES04609 | Sorghum | nucleus | 20.47 | 28.19 |
| EER99092 | Sorghum | nucleus | 19.61 | 23.45 |
| EES11232 | Sorghum | nucleus | 21.12 | 23.45 |
| EES11579 | Sorghum | nucleus | 19.18 | 22.25 |
| EES14266 | Sorghum | nucleus | 19.61 | 22.25 |
| OQU84482 | Sorghum | nucleus | 20.47 | 21.35 |
| EER88765 | Sorghum | nucleus | 19.4 | 20.27 |
| OQU77017 | Sorghum | nucleus | 19.18 | 20.23 |
| EES04495 | Sorghum | nucleus | 20.04 | 19.38 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.65 | 5.17 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:8058970 | UniProt:C5X4Q4 | EnsemblPlants:EER97011 | ProteinID:EER97011 |
| ProteinID:EER97011.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 |
| PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF33 | InterPro:SBP_dom | InterPro:SBP_sf |
| EnsemblPlantsGene:SORBI_3002G257900 | SUPFAM:SSF103612 | unigene:Sbi.9870 | UniParc:UPI0001A83827 | RefSeq:XP_002460490.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:+:64368406..64372901
Molecular Weight (calculated)
48123.0 Da
IEP (calculated)
7.270
GRAVY (calculated)
-0.359
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWDLKMPVS WDLPDLEHDA AMPQPPPIAA TAAAASPAAA SGIAAAATAA PPHAAATRGA PSRAECSVDL KLGGLGEFGA VADGTKEPAA AATATAAPSA
101: PSASPMKRPR SGPGGAAGAQ CPSCAVDGCK ADLSKCRDYH RRHKVCEAHS KTPVVVVAGR EMRFCQQCSR FHLLAEFDEA KRSCRKRLDG HNRRRRKPQP
201: DAMNSGSFMT SQQGLFSSAG TRFSSFPAPR PEPSWSGVIK SEDSSYYTPH PHPVLSNRPH FAGGSTSSAY SKEGRRFPFL QDGDQVSFSA GAGTLEVSTV
301: CQPLLKTAAA AAPPPESSSS NKMFSDGLTP VLDSDCALSL LSSPANSSSV DVSRMVVQPA AEHIPMAQPL VPSSSLQHHH QHHQFGSSPG GWFACSQAGS
401: SAVSGAGTGT GGFACPASVE SEQLNTVLVP SNDAGHEMNY HGIFHVGGEG SSDGTSPSLP FSWQ
101: PSASPMKRPR SGPGGAAGAQ CPSCAVDGCK ADLSKCRDYH RRHKVCEAHS KTPVVVVAGR EMRFCQQCSR FHLLAEFDEA KRSCRKRLDG HNRRRRKPQP
201: DAMNSGSFMT SQQGLFSSAG TRFSSFPAPR PEPSWSGVIK SEDSSYYTPH PHPVLSNRPH FAGGSTSSAY SKEGRRFPFL QDGDQVSFSA GAGTLEVSTV
301: CQPLLKTAAA AAPPPESSSS NKMFSDGLTP VLDSDCALSL LSSPANSSSV DVSRMVVQPA AEHIPMAQPL VPSSSLQHHH QHHQFGSSPG GWFACSQAGS
401: SAVSGAGTGT GGFACPASVE SEQLNTVLVP SNDAGHEMNY HGIFHVGGEG SSDGTSPSLP FSWQ
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.