CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049822_P001	Maize	nucleus	78.29	82.64
Zm00001d049824_P002	Maize	nucleus	78.29	82.07
HORVU0Hr1G039170.6	Barley	nucleus	65.79	75.0
TraesCS7B01G158500.1	Wheat	nucleus	66.89	74.57
TraesCS7D01G261500.1	Wheat	nucleus	67.54	74.4
TraesCS7A01G260500.1	Wheat	nucleus	66.01	73.96
Os08t0531600-01	Rice	nucleus	64.47	64.62
EER97011	Sorghum	nucleus	60.75	59.7
GSMUA_AchrUn_...	Banana	nucleus	38.82	50.57
GSMUA_AchrUn_...	Banana	nucleus	36.4	47.03
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	32.89	47.02
GSMUA_AchrUn_...	Banana	nucleus	38.16	46.77
GSMUA_Achr5P25090_001	Banana	nucleus	39.04	43.1
GSMUA_Achr11P...	Banana	nucleus	36.4	40.0
GSMUA_Achr4P16050_001	Banana	nucleus	31.36	39.72
EES01979	Sorghum	nucleus	32.46	36.72
VIT_14s0068g01780.t01	Wine grape	nucleus	29.61	35.71
KRG94562	Soybean	nucleus	27.63	34.52
KRH06918	Soybean	nucleus	26.75	33.42
EER97257	Sorghum	nucleus	14.69	31.16
KXG36284	Sorghum	nucleus	13.38	27.98
EES04609	Sorghum	nucleus	20.18	27.3
EER99092	Sorghum	nucleus	20.18	23.71
EES11232	Sorghum	nucleus	21.49	23.45
EES14266	Sorghum	nucleus	20.18	22.49
EES11579	Sorghum	nucleus	19.08	21.75
OQU77017	Sorghum	nucleus	19.74	20.45
EES04495	Sorghum	nucleus	20.61	19.58
OQU84482	Sorghum	nucleus	19.08	19.55
EER88765	Sorghum	nucleus	18.86	19.37
CDX80286	Canola	cytosol, nucleus, plasma membrane	1.54	12.07

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:A0A1B6PIM2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
InterPro:IPR004333	InterPro:IPR036893	EnsemblPlants:KXG25534	ProteinID:KXG25534	ProteinID:KXG25534.1	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF33	InterPro:SBP_dom	InterPro:SBP_sf	EnsemblPlantsGene:SORBI_3007G193500
SUPFAM:SSF103612	UniParc:UPI0003C716EB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:62605971..62612183

Molecular Weight (calculated)

47376.2 Da

IEP (calculated)

8.011

GRAVY (calculated)

-0.478

Length

456 amino acids

Sequence
(BLAST)

001: MDWDLKAPGA WDLAELEHEQ HAAATAAAAG PSGGHANAGV AGTGTGCRPP PGAGGAPAEC SVDLKLGGLG EPGAAPPARR EREAAAAAAA AAGKVASASS
101: GAAAGAKRPR PGGQHQQGQG QHQQQQCPSC AVEGCKADLS KCRDYHRRHK VCEAHSKTPV VVVAGREMRF CQQCSRFHLL AEFDADKRSC RKRLDGHNRR
201: RRKPQPDTMA SASFITSQQG TRFSPFAPPR LEASWPGVIK TEESPYYTHQ IPLGSSSNRQ QHFVGSTTPA YAKEGRRFPF LQEGEISFAT GVVLEPPACQ
301: PLLKTVAVAP PESSSSSSAG GGNKMFSDGL TRVLDSECAL SLLSAPANSS GIDVSRMVRP TEHVPMAQPV VSGLQFGSSS WFSPRPQAST GVTAGSGFPS
401: CPAVVEGEQQ QLNTVLSPHD NEVNYGGMFH VGGGSGGGGE GSSDGGTSSS MPFSWQ

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.