Factsheet for VIT_14s0068g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P27520_001	Banana	plastid	20.63	50.98
VIT_10s0003g00050.t01	Wine grape	nucleus	15.87	42.86
VIT_01s0010g03910.t01	Wine grape	nucleus	42.33	41.13
VIT_17s0000g01260.t01	Wine grape	nucleus	40.21	37.91
GSMUA_Achr2P06150_001	Banana	nucleus	38.89	37.4
GSMUA_AchrUn_...	Banana	nucleus	36.77	37.37
GSMUA_AchrUn_...	Banana	nucleus	34.39	37.14
GSMUA_AchrUn_...	Banana	nucleus	34.13	36.54
GSMUA_Achr7P22940_001	Banana	nucleus, vacuole	30.69	36.36
TraesCS7A01G260500.1	Wheat	nucleus	37.83	35.14
HORVU0Hr1G039170.6	Barley	nucleus	37.04	35.0
TraesCS7B01G158500.1	Wheat	nucleus	37.83	34.96
GSMUA_Achr6P06030_001	Banana	nucleus	34.13	34.96
GSMUA_Achr9P01380_001	Banana	nucleus	34.39	34.85
TraesCS7D01G261500.1	Wheat	nucleus	37.83	34.54
GSMUA_Achr9P29330_001	Banana	nucleus	34.13	33.77
GSMUA_Achr4P16050_001	Banana	nucleus	32.01	33.61
KRH06918	Soybean	nucleus	32.01	33.15
VIT_12s0028g03350.t01	Wine grape	nucleus	14.81	33.14
KRG94562	Soybean	nucleus	31.48	32.6
Zm00001d006091_P001	Maize	nucleus	36.24	32.39
GSMUA_Achr5P25090_001	Banana	nucleus	34.92	31.96
GSMUA_Achr11P...	Banana	nucleus	34.66	31.57
TraesCS5D01G294400.1	Wheat	nucleus	35.71	31.25
TraesCS5B01G286000.1	Wheat	nucleus	35.71	31.18
Zm00001d049822_P001	Maize	nucleus	35.45	31.02
TraesCS5A01G286700.2	Wheat	nucleus	35.45	30.73
Zm00001d049824_P002	Maize	nucleus	34.92	30.34
Os08t0531600-01	Rice	nucleus	36.24	30.11
EER97011	Sorghum	nucleus	36.77	29.96
KXG25534	Sorghum	nucleus	35.71	29.61
TraesCS3B01G468400.1	Wheat	nucleus	32.28	29.47
VIT_04s0210g00170.t01	Wine grape	nucleus	16.14	29.47
Os09t0507100-00	Rice	nucleus	36.77	29.45
TraesCS3A01G432500.1	Wheat	nucleus	32.28	29.4
TraesCS3D01G425800.1	Wheat	nucleus	32.54	29.36
HORVU5Hr1G076380.9	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	30.42	29.34
Os01t0922600-01	Rice	nucleus	24.07	29.26
Zm00001d021056_P001	Maize	nucleus	35.98	29.25
VIT_19s0014g02350.t01	Wine grape	nucleus	15.61	28.92
EES01979	Sorghum	nucleus	30.16	28.29
Zm00001d012015_P001	Maize	nucleus	28.04	28.27
HORVU3Hr1G094730.2	Barley	nucleus	31.75	27.97
Zm00001d042319_P001	Maize	nucleus	28.04	25.92
VIT_08s0007g06270.t01	Wine grape	nucleus	23.55	23.48
VIT_15s0021g02300.t01	Wine grape	nucleus	17.72	22.04
VIT_01s0010g03710.t01	Wine grape	nucleus	25.4	20.13
VIT_11s0065g00170.t01	Wine grape	nucleus	23.81	19.35
VIT_15s0021g02290.t01	Wine grape	nucleus	20.11	19.05
VIT_17s0000g05020.t01	Wine grape	nucleus	25.66	17.41
TraesCS4D01G332700.1	Wheat	nucleus	10.05	17.35
CDX80286	Canola	cytosol, nucleus, plasma membrane	2.65	17.24
VIT_01s0011g00130.t01	Wine grape	nucleus	19.58	14.6

Protein Annotations

EntrezGene:100241234	wikigene:100241234	MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:A5BTU0	EMBL:AM470860
ProteinID:CAN66012	ProteinID:CAN66012.1	ProteinID:CBI21330	ProteinID:CBI21330.3	EMBL:FN595232	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	EntrezGene:LOC100241234	wikigene:LOC100241234
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF29	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI000152199E	ArrayExpress:VIT_14s0068g01780	EnsemblPlantsGene:VIT_14s0068g01780	EnsemblPlants:VIT_14s0068g01780.t01	RefSeq:XP_002274360
RefSeq:XP_002274360.1	RefSeq:XP_010660739.1	RefSeq:XP_010660740.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:25486818..25489754

Molecular Weight (calculated)

42110.5 Da

IEP (calculated)

8.500

GRAVY (calculated)

-0.650

Length

378 amino acids

Sequence
(BLAST)

001: MEWNLQPSTW DLIELNQEKD PYMPTTVGSG TLLGQKTKEK FSVDLKLGRL GDLGDGSTDK FKDSKSLRVS SPSGSSRRAR ALNGTQNVSC LVDGCTSDLR
101: NCREYHRRHR VCERHSKTPV VIIGGQEKRF CQQCSRFHSL GEFDEVKRSC RKRLDGHNRR RRKTQPESFY LGSGNFLSNH QGTGFLQFGS SQMLTTSTAS
201: SPTWPRIARS EEEAMFYNHC QQLHVGPIPF PNSMYNRGGD KEFPFLQDND PKISHLVVAP EVPNFHPVRV QSKNGRASHE LTRPASSDCA FSLLSLPATQ
301: FSGISLAQLL HTNATPPVQT ISSGPHWFNN LAQDSCSQVI ESMPISPVLV PVDTTKANDH CNTMFHMGSS GLSENEPS

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.