Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G468400.1 | Wheat | nucleus | 89.98 | 93.24 |
| TraesCS3A01G432500.1 | Wheat | nucleus | 89.98 | 93.01 |
| TraesCS3D01G425800.1 | Wheat | nucleus | 89.98 | 92.12 |
| Os01t0922600-01 | Rice | nucleus | 47.09 | 64.95 |
| EES01979 | Sorghum | nucleus | 57.81 | 61.54 |
| Zm00001d012015_P001 | Maize | nucleus | 51.98 | 59.47 |
| Zm00001d042319_P001 | Maize | nucleus | 56.64 | 59.41 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.3 | 36.83 |
| HORVU2Hr1G097610.1 | Barley | nucleus | 17.02 | 35.96 |
| HORVU0Hr1G039170.6 | Barley | nucleus | 33.33 | 35.75 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 26.11 | 35.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.3 | 34.95 |
| HORVU2Hr1G097580.1 | Barley | nucleus | 17.02 | 34.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.44 | 34.86 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 32.4 | 33.66 |
| VIT_14s0068g01780.t01 | Wine grape | nucleus | 27.97 | 31.75 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 26.57 | 31.67 |
| HORVU2Hr1G048280.2 | Barley | plastid | 14.22 | 31.28 |
| KRH06918 | Soybean | nucleus | 24.94 | 29.32 |
| HORVU5Hr1G076380.9 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 26.57 | 29.08 |
| KRG94562 | Soybean | nucleus | 24.71 | 29.04 |
| GSMUA_Achr11P... | Banana | nucleus | 27.27 | 28.19 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 19.58 | 25.77 |
| HORVU5Hr1G073440.7 | Barley | nucleus | 20.51 | 21.15 |
| HORVU7Hr1G110980.3 | Barley | nucleus, plastid | 19.35 | 18.49 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 20.05 | 16.96 |
| HORVU6Hr1G030490.2 | Barley | nucleus, plastid | 18.41 | 16.09 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.7 | 5.17 |
| HORVU2Hr1G111620.1 | Barley | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | UniProt:A0A287MD52 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 |
| EnsemblPlantsGene:HORVU3Hr1G094730 | EnsemblPlants:HORVU3Hr1G094730.2 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 |
| PANTHER:PTHR31251 | PANTHER:PTHR31251:SF63 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI000B4873D5 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:647368957..647372642
Molecular Weight (calculated)
45693.2 Da
IEP (calculated)
8.838
GRAVY (calculated)
-0.619
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: EFSGHRETCV RARVFGMDSW EPKMPSWDLG TVVAPSGGGG GGGGGGALDL KLGAPTSWRP VPAPVVSVQQ QQQQQPPSAA TAKRARAGQG QQTVPACSVE
101: GCTADLSRCR EYHRRHKVCE AHSKTPVVAV AGQQQRFCQQ CSRFHLLGEF DEVKRSCRKR LDGHNRRRRK PQPDPLNPAG LFANHHGVPR FASYPQIFSP
201: TSMAEPKWPG GIAVKTEADA FHEQYYSFNG AASLFHHGKP ERKHFPFLTD GGDATFGCQP PAFTITPSSE SSSNSSRHSN GKTTMFAHDG GPDHNCALSL
301: LSDNPAPAHI MNPAEAHHLG GGGGVTIQYG GGGGGKVARL HNNGDVSLTG LSYVSLGDKG APMLLHTSNR SQHAAATATT AVTTSTAPAP TASQMQQYHG
401: YYHHQHQVGA DQGNHQDAGG MHALPFSSW
101: GCTADLSRCR EYHRRHKVCE AHSKTPVVAV AGQQQRFCQQ CSRFHLLGEF DEVKRSCRKR LDGHNRRRRK PQPDPLNPAG LFANHHGVPR FASYPQIFSP
201: TSMAEPKWPG GIAVKTEADA FHEQYYSFNG AASLFHHGKP ERKHFPFLTD GGDATFGCQP PAFTITPSSE SSSNSSRHSN GKTTMFAHDG GPDHNCALSL
301: LSDNPAPAHI MNPAEAHHLG GGGGVTIQYG GGGGGKVARL HNNGDVSLTG LSYVSLGDKG APMLLHTSNR SQHAAATATT AVTTSTAPAP TASQMQQYHG
401: YYHHQHQVGA DQGNHQDAGG MHALPFSSW
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.