Factsheet for HORVU6Hr1G019700.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G006930.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	HORVU4Hr1G006930.1	AT1G14920.1	22942378
AT1G27360.1	HORVU4Hr1G006930.1	AT2G01570.1	22942378
AT1G27370.1	HORVU4Hr1G006930.1	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G098500.1	Wheat	nucleus	87.38	93.66
TraesCS6B01G138400.1	Wheat	nucleus	87.38	93.66
TraesCS6A01G110100.2	Wheat	nucleus	86.39	92.21
Os02t0139400-01	Rice	nucleus	38.86	69.86
EES04495	Sorghum	nucleus	60.75	64.17
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	57.2	54.61
Zm00001d053890_P003	Maize	nucleus	49.31	51.87
GSMUA_Achr5P21990_001	Banana	nucleus	36.88	43.19
VIT_11s0065g00170.t01	Wine grape	nucleus	37.08	40.43
VIT_01s0010g03710.t01	Wine grape	nucleus	37.28	39.62
HORVU6Hr1G031450.6	Barley	nucleus	25.05	38.96
KRG97402	Soybean	nucleus	33.14	38.8
PGSC0003DMT400084734	Potato	nucleus	35.31	38.49
Solyc05g015510.2.1	Tomato	nucleus	34.71	38.01
KRH31506	Soybean	nucleus	32.94	37.7
Bra033671.1-P	Field mustard	nucleus	26.63	37.29
PGSC0003DMT400068752	Potato	nucleus	27.81	36.62
Solyc04g045560.2.1	Tomato	nucleus	24.85	36.0
CDY27611	Canola	nucleus	25.84	35.89
Bra032822.1-P	Field mustard	nucleus	25.84	35.89
AT1G27370.1	Thale cress	nucleus	28.01	35.86
Bra032823.1-P	Field mustard	nucleus	23.08	35.67
CDY03913	Canola	nucleus	25.84	35.31
CDY27612	Canola	nucleus	22.88	35.26
CDX84928	Canola	nucleus	25.25	35.16
CDY32959	Canola	nucleus	26.82	34.87
Bra027478.1-P	Field mustard	nucleus	26.82	34.87
CDX84927	Canola	nucleus	25.05	34.6
AT5G43270.1	Thale cress	nucleus	28.21	34.13
Bra030040.1-P	Field mustard	nucleus	26.23	34.1
CDY43604	Canola	nucleus	25.84	34.03
HORVU2Hr1G097610.1	Barley	nucleus	13.61	33.99
CDY15713	Canola	nucleus	26.04	33.85
AT1G27360.1	Thale cress	nucleus	26.23	33.84
CDY03914	Canola	nucleus	24.65	33.6
Bra030041.1-P	Field mustard	nucleus	24.46	33.16
CDY15712	Canola	nucleus	24.46	33.16
HORVU2Hr1G097580.1	Barley	nucleus	13.61	33.01
CDY67700	Canola	nucleus	22.49	32.95
Bra010949.1-P	Field mustard	nucleus	23.27	32.24
CDY11816	Canola	nucleus	23.08	32.05
CDY47812	Canola	nucleus	30.18	29.65
CDY22356	Canola	nucleus	30.18	29.48
HORVU2Hr1G048280.2	Barley	plastid	10.85	28.21
HORVU0Hr1G039170.6	Barley	nucleus	17.95	22.75
HORVU5Hr1G073440.7	Barley	nucleus	17.95	21.88
HORVU5Hr1G076380.9	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	15.98	20.66
HORVU3Hr1G094730.2	Barley	nucleus	16.96	20.05
HORVU7Hr1G110980.3	Barley	nucleus, plastid	15.38	17.37
HORVU6Hr1G030490.2	Barley	nucleus, plastid	16.37	16.9
HORVU2Hr1G111620.1	Barley	cytosol, nucleus	0.39	3.12

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:A0A287TIH3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
EnsemblPlantsGene:HORVU6Hr1G019700	EnsemblPlants:HORVU6Hr1G019700.3	InterPro:IPR004333	InterPro:IPR036893	PFAM:PF03110	PFscan:PS51141
PANTHER:PTHR31251	PANTHER:PTHR31251:SF24	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI000B4629AE
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:53910043..53915538

Molecular Weight (calculated)

54612.9 Da

IEP (calculated)

8.914

GRAVY (calculated)

-0.556

Length

507 amino acids

Sequence
(BLAST)

001: MISRYYQQCI IFVVSSFDTQ VGGGAAPEIL GSGMGSFGME WNQRSSVLWD WENFPPIGGD NPKNAMQAEP RFAAVAAAMG NEPLNSSGGS GTFSSSSEMG
101: YGSSKSSISA SIDSSSKAGS NMEFRFAPVK NPDRNTSENT ELGKVDNTRT GTSPSSVVAV SSGEPVIGLK LGKRTYFEDV CGGQSVKSSP SGAASVPNKS
201: PALSKKAKAE QQKAHNSYCQ VEGCKVDLSS VKEYHRKHRV CELHSKAPKV VVAGLERRFC QQCSRFHALS EFDQKKRSCR RRLNDHNSRR RKPQPEAISF
301: SSSRMSTMFY DARQQPNFLF GQAPYVQMRS CGSSSWDEPG GFKVTHTKAP WLKPTTAAGV DGMHLSSQQM SDNVMPHGAH HGFDGFMAFK GTSTKFPNQG
401: VQASAVAPNS SGAPDLQHAL SLLSSNPVGA ANLQPTSQMH SGVAAIAGTP NPAMHVLGSS AGLWLDGGPP LDDHPRFQVF ERLGDHDSEL QLPKPSYDHA
501: SHFDRMH

Best Arabidopsis Sequence Match ( AT1G27370.1 )
(BLAST)

001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI

Arabidopsis Description

SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.