Factsheet for HORVU5Hr1G073440.7

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G265600.2	Wheat	nucleus	87.5	91.92
TraesCS5D01G273900.2	Wheat	nucleus	89.18	90.93
TraesCS5A01G265900.2	Wheat	nucleus	87.26	88.32
HORVU2Hr1G097610.1	Barley	nucleus	17.31	35.47
HORVU2Hr1G097580.1	Barley	nucleus	17.31	34.45
VIT_08s0007g06270.t01	Wine grape	nucleus	30.77	33.77
PGSC0003DMT400029751	Potato	nucleus	29.57	33.06
Solyc10g078700.1.1	Tomato	nucleus	29.33	32.8
KRH71914	Soybean	nucleus, plastid	28.12	32.68
GSMUA_Achr9P20220_001	Banana	nucleus	19.23	32.52
KRG95361	Soybean	nucleus	27.64	32.03
KRH38141	Soybean	nucleus, plastid	28.61	31.9
KRH67040	Soybean	nucleus	27.88	31.61
CDX98259	Canola	nucleus	24.04	30.77
CDY06881	Canola	nucleus	26.44	30.3
Bra016891.1-P	Field mustard	nucleus	26.44	30.3
CDY14818	Canola	nucleus	26.44	29.97
CDX79888	Canola	nucleus	26.44	29.89
AT2G42200.1	Thale cress	nucleus	26.68	29.6
CDY53504	Canola	nucleus	26.2	29.46
CDY61750	Canola	nucleus	21.63	29.22
Bra003305.1-P	Field mustard	nucleus	22.12	29.11
Bra004674.1-P	Field mustard	nucleus	25.72	29.0
CDX67715	Canola	nucleus	21.88	28.8
HORVU2Hr1G048280.2	Barley	plastid	13.46	28.72
CDY47656	Canola	nucleus	22.12	28.4
Bra014599.1-P	Field mustard	nucleus	19.71	27.15
AT3G57920.1	Thale cress	nucleus	23.08	27.12
HORVU6Hr1G031450.6	Barley	nucleus	19.95	25.46
HORVU0Hr1G039170.6	Barley	nucleus	20.67	21.5
HORVU5Hr1G076380.9	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	19.47	20.66
HORVU3Hr1G094730.2	Barley	nucleus	21.15	20.51
HORVU7Hr1G110980.3	Barley	nucleus, plastid	20.91	19.38
HORVU6Hr1G019700.3	Barley	nucleus	21.88	17.95
HORVU6Hr1G030490.2	Barley	nucleus, plastid	18.27	15.48
HORVU2Hr1G111620.1	Barley	cytosol, nucleus	0.24	1.56

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	UniProt:A0A287RSH3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872
EnsemblPlantsGene:HORVU5Hr1G073440	EnsemblPlants:HORVU5Hr1G073440.7	InterPro:IPR004333	InterPro:IPR036893	PFAM:PF03110	PFscan:PS51141
PANTHER:PTHR31251	PANTHER:PTHR31251:SF59	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI000B47F5EF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:539014630..539018210

Molecular Weight (calculated)

43012.6 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.667

Length

416 amino acids

Sequence
(BLAST)

001: AAAAAMETGS SGGGRGPGDD VHGLHFGKKI YFEQDVAGGS GSSSSASGGR RGRGPAGPGG GGGGGGGGGG GGGGGGASTP AAGGSASQSQ QPRCQVEGCG
101: VDLSGGKTYY CRHKVCSMHS KAPLVVVAGI EQRFCQQCSR FHQLPEFDQG KRSCRRRLAG HNERRRKPPP GPMSTRYGRL AASFNEDPGR FRSFLLDFSY
201: PRAPAGVRDP WPAVQPGDHR MPGTTHWQGQ GSHHEQHHAH RSAVAGYGDH HAYNGQGSSS GGGGAPMIPA GFELPSDECM AGVAADSSCA LSLLSTQPWD
301: SSAHSSSHIR SPAMSTASAF QGSPVAPSVM ASNYMAAASS SGSWGSPRGA RSMQQQHHHH HMQHDTVMNE VHPSSVHHGQ FGELELALQQ GRATPNPPHA
401: EHGAFSHSSN AMNWSL

Best Arabidopsis Sequence Match ( AT2G42200.1 )
(BLAST)

001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL

Arabidopsis Description

SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.