Factsheet for Bra004674.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79888	Canola	nucleus	98.1	98.37
CDY53504	Canola	nucleus	97.56	97.3
Bra016891.1-P	Field mustard	nucleus	86.72	88.15
AT2G42200.1	Thale cress	nucleus	85.91	84.53
Bra003305.1-P	Field mustard	nucleus	45.8	53.48
Bra014599.1-P	Field mustard	nucleus	39.3	48.01
VIT_08s0007g06270.t01	Wine grape	nucleus	46.61	45.38
KRH67040	Soybean	nucleus	42.01	42.23
KRG95361	Soybean	nucleus	40.38	41.5
Bra021880.1-P	Field mustard	nucleus	14.91	39.01
KRH38141	Soybean	nucleus, plastid	38.48	38.07
Bra005470.1-P	Field mustard	nucleus	14.63	38.03
GSMUA_Achr4P03880_001	Banana	nucleus	29.0	37.54
KRH71914	Soybean	nucleus, plastid	35.77	36.87
Solyc10g078700.1.1	Tomato	nucleus	36.86	36.56
PGSC0003DMT400029751	Potato	nucleus	36.86	36.56
GSMUA_Achr7P20510_001	Banana	nucleus	33.6	36.36
Bra032662.1-P	Field mustard	nucleus	14.63	34.18
GSMUA_Achr9P22260_001	Banana	nucleus	30.89	33.24
GSMUA_Achr8P25550_001	Banana	nucleus	30.89	33.14
Bra038101.1-P	Field mustard	nucleus	16.26	32.79
Bra021094.1-P	Field mustard	nucleus	15.45	32.39
Bra039656.1-P	Field mustard	nucleus	15.72	32.22
GSMUA_Achr4P01450_001	Banana	nucleus	30.08	31.09
GSMUA_Achr7P02020_001	Banana	nucleus	28.73	30.64
Bra027265.1-P	Field mustard	nucleus	14.63	30.17
GSMUA_Achr6P22280_001	Banana	nucleus	33.06	29.68
GSMUA_Achr9P20220_001	Banana	nucleus	19.78	29.67
GSMUA_Achr3P11170_001	Banana	nucleus	30.08	28.61
Zm00001d006028_P001	Maize	nucleus	29.54	28.46
GSMUA_Achr9P27660_001	Banana	nucleus	28.46	28.46
Zm00001d020941_P001	Maize	nucleus	29.0	28.31
Bra004363.1-P	Field mustard	nucleus	22.76	27.91
EER99092	Sorghum	nucleus	28.73	27.32
TraesCS5B01G265600.2	Wheat	nucleus	29.27	27.27
TraesCS7B01G144900.1	Wheat	nucleus	28.46	27.2
TraesCS7D01G245200.2	Wheat	nucleus	28.18	27.01
TraesCS7A01G246500.1	Wheat	nucleus	28.18	26.94
TraesCS5D01G273900.2	Wheat	nucleus	29.54	26.72
Os09t0491532-01	Rice	nucleus	23.31	26.63
TraesCS5A01G265900.2	Wheat	nucleus	29.27	26.28
HORVU5Hr1G073440.7	Barley	nucleus	29.0	25.72
EES14266	Sorghum	nucleus	28.46	25.67
Bra038324.1-P	Field mustard	nucleus	22.49	25.46
Zm00001d031451_P001	Maize	nucleus	27.64	25.31
Zm00001d052890_P001	Maize	nucleus	27.37	24.75
Os08t0509600-01	Rice	nucleus	27.91	24.7
Bra033671.1-P	Field mustard	nucleus	23.04	23.48
Bra022766.1-P	Field mustard	nucleus	21.41	23.1
Bra027478.1-P	Field mustard	nucleus	23.85	22.56
Bra032823.1-P	Field mustard	nucleus	20.05	22.56
Bra032822.1-P	Field mustard	nucleus	21.41	21.64
Bra030040.1-P	Field mustard	nucleus	22.49	21.28
Bra033221.1-P	Field mustard	nucleus	18.7	21.04
Bra010949.1-P	Field mustard	nucleus	20.6	20.77
Bra030041.1-P	Field mustard	nucleus	20.87	20.59

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra004674	EnsemblPlants:Bra004674.1	EnsemblPlants:Bra004674.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4CKD9	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF62	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI0002547893	SEG:seg	:	:	:	:

Description

AT2G42200 (E=3e-136) SPL9 | SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor

Coordinates

chrA05:+:1325605..1327587

Molecular Weight (calculated)

40062.5 Da

IEP (calculated)

8.733

GRAVY (calculated)

-0.817

Length

369 amino acids

Sequence
(BLAST)

001: MDRGSNSGLG LGPGQTESGG SSTESSSLSG GLMFGQRIYF EDAGGGTGSS SSGGSNRRVR GSGSGPSGQI PKCQVEGCGM DLTNAKGYYT RHRVCGMHSK
101: TPKVIVAGIE QRFCQQCSRF HQLPEFDLEK RSCRRRLAGH NERRRKPQPA SLSVLSSRYG RITPSLYGNG ETTMNGSFLG SQEMGWNSAR TLDTRVMRRP
201: PSWQINPMNV FSHGSVSGGG GGGISFSSPE IMDTKPESYK GIGSVTNCAL SLLSNPHQPH DNNNSNNTWR TSSGFGPMTV TMAQPPPAPS QQHQYLNPPW
301: VFKDDDNSCP NDMSPVLNLG RFTETEISGG TTLGEFELSD HHHQNRRQYM ESENTRAYGS SSHHNNWSL

Best Arabidopsis Sequence Match ( AT2G42200.1 )
(BLAST)

001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL

Arabidopsis Description

SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.