Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99092 | Sorghum | nucleus | 86.51 | 84.28 |
| Zm00001d006028_P001 | Maize | nucleus | 79.37 | 78.33 |
| Os09t0491532-01 | Rice | nucleus | 56.88 | 66.56 |
| TraesCS7A01G246500.1 | Wheat | nucleus | 62.7 | 61.4 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 62.17 | 60.88 |
| TraesCS7D01G245200.2 | Wheat | nucleus | 60.85 | 59.74 |
| Os08t0509600-01 | Rice | nucleus | 60.85 | 55.16 |
| Zm00001d031451_P001 | Maize | nucleus | 55.82 | 52.36 |
| Zm00001d052890_P001 | Maize | nucleus | 55.29 | 51.23 |
| GSMUA_Achr7P02020_001 | Banana | nucleus | 44.71 | 48.84 |
| KRG95361 | Soybean | nucleus | 32.8 | 34.54 |
| KRH71914 | Soybean | nucleus, plastid | 32.01 | 33.8 |
| KRH67040 | Soybean | nucleus | 32.28 | 33.24 |
| KRH38141 | Soybean | nucleus, plastid | 32.01 | 32.44 |
| CDY06881 | Canola | nucleus | 30.42 | 31.68 |
| Bra016891.1-P | Field mustard | nucleus | 30.42 | 31.68 |
| VIT_08s0007g06270.t01 | Wine grape | nucleus | 31.75 | 31.66 |
| CDY14818 | Canola | nucleus | 30.42 | 31.34 |
| PGSC0003DMT400029751 | Potato | nucleus | 29.63 | 30.11 |
| CDX79888 | Canola | nucleus | 29.1 | 29.89 |
| CDX98259 | Canola | nucleus | 25.66 | 29.85 |
| Solyc10g078700.1.1 | Tomato | nucleus | 29.37 | 29.84 |
| CDY53504 | Canola | nucleus | 29.1 | 29.73 |
| AT2G42200.1 | Thale cress | nucleus | 29.37 | 29.6 |
| Bra004674.1-P | Field mustard | nucleus | 28.31 | 29.0 |
| CDY61750 | Canola | nucleus | 23.55 | 28.9 |
| Bra003305.1-P | Field mustard | nucleus | 24.07 | 28.8 |
| Zm00001d021573_P001 | Maize | mitochondrion | 15.61 | 28.64 |
| CDX67715 | Canola | nucleus | 23.55 | 28.16 |
| CDY47656 | Canola | nucleus | 24.07 | 28.09 |
| Bra014599.1-P | Field mustard | nucleus | 21.43 | 26.82 |
| AT3G57920.1 | Thale cress | nucleus | 24.87 | 26.55 |
| Zm00001d006451_P001 | Maize | mitochondrion | 16.67 | 24.8 |
| Zm00001d053775_P001 | Maize | nucleus | 21.43 | 24.47 |
| Zm00001d015410_P002 | Maize | nucleus | 21.43 | 24.4 |
| Zm00001d012015_P001 | Maize | nucleus | 23.28 | 23.47 |
| Zm00001d026175_P001 | Maize | nucleus | 23.55 | 22.31 |
| Zm00001d006091_P001 | Maize | nucleus | 24.34 | 21.75 |
| Zm00001d042319_P001 | Maize | nucleus | 23.28 | 21.52 |
| Zm00001d049824_P002 | Maize | nucleus | 24.07 | 20.92 |
| Zm00001d049822_P001 | Maize | nucleus | 23.55 | 20.6 |
| Zm00001d021056_P001 | Maize | nucleus | 24.87 | 20.22 |
| Zm00001d026491_P001 | Maize | nucleus | 20.63 | 19.7 |
| Zm00001d002005_P001 | Maize | nucleus | 20.37 | 19.3 |
| Zm00001d053890_P003 | Maize | nucleus | 24.07 | 18.88 |
| Zm00001d014698_P001 | Maize | nucleus | 21.69 | 18.68 |
| Zm00001d053756_P001 | Maize | nucleus | 18.52 | 17.24 |
| Zm00001d046906_P001 | Maize | nucleus | 19.05 | 16.98 |
| Zm00001d036692_P001 | Maize | nucleus | 19.05 | 16.59 |
| Zm00001d015451_P001 | Maize | nucleus | 19.31 | 16.55 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 23.02 | 16.38 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:542666 | UniProt:B4FXD9 | EMBL:BT041777 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046872 | EMBL:HQ858679 | InterPro:IPR004333 | InterPro:IPR036893 | ProteinID:ONM55843.1 |
| PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF59 | InterPro:SBP_dom | InterPro:SBP_sf |
| SUPFAM:SSF103612 | UniParc:UPI000187525A | EnsemblPlantsGene:Zm00001d020941 | EnsemblPlants:Zm00001d020941_P001 | EnsemblPlants:Zm00001d020941_T001 | SEG:seg |
Description
tassel sheath4 tassel sheath4
Coordinates
chr7:-:137273600..137277139
Molecular Weight (calculated)
39601.3 Da
IEP (calculated)
9.324
GRAVY (calculated)
-0.480
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGGGSSRS DDVRGLKFGK KIYFEQDGGS GSGAGAVGGR KGKGVATGGA RPASAASAAQ PPRCQVDGCG VDLSAVKQYY CRHKVCNMHS KEPRVFVAGI
101: EQRFCQQCSR FHQLHEFDQG KRSCRRRLIG HNERRRKPPP GPLTSRYGRL AASLQEPGRF RSFLLDFSYP RVPSSVRDAW PGIQHGGDRM LGTVQWHGHQ
201: EPPHPHRSAA AGYGNHAAYN CHGGLVAGGA PMLSSAAFEL PPGGCVAGVA ADSSCALSLL STQPWDTTSH DHRSPAMPAA GAFDGTPVAP SVMASSYAAS
301: SAWTGSRDPA ADGARNAQRL DDALHLVHPG SAAVHFSGEL ELALQGSGGP PHLPRVDHGG SGGGTFNHST TSAMNWSL
101: EQRFCQQCSR FHQLHEFDQG KRSCRRRLIG HNERRRKPPP GPLTSRYGRL AASLQEPGRF RSFLLDFSYP RVPSSVRDAW PGIQHGGDRM LGTVQWHGHQ
201: EPPHPHRSAA AGYGNHAAYN CHGGLVAGGA PMLSSAAFEL PPGGCVAGVA ADSSCALSLL STQPWDTTSH DHRSPAMPAA GAFDGTPVAP SVMASSYAAS
301: SAWTGSRDPA ADGARNAQRL DDALHLVHPG SAAVHFSGEL ELALQGSGGP PHLPRVDHGG SGGGTFNHST TSAMNWSL
001: MEMGSNSGPG HGPGQAESGG SSTESSSFSG GLMFGQKIYF EDGGGGSGSS SSGGRSNRRV RGGGSGQSGQ IPRCQVEGCG MDLTNAKGYY SRHRVCGVHS
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
101: KTPKVTVAGI EQRFCQQCSR FHQLPEFDLE KRSCRRRLAG HNERRRKPQP ASLSVLASRY GRIAPSLYEN GDAGMNGSFL GNQEIGWPSS RTLDTRVMRR
201: PVSSPSWQIN PMNVFSQGSV GGGGTSFSSP EIMDTKLESY KGIGDSNCAL SLLSNPHQPH DNNNNNNNNN NNNNNTWRAS SGFGPMTVTM AQPPPAPSQH
301: QYLNPPWVFK DNDNDMSPVL NLGRYTEPDN CQISSGTAMG EFELSDHHHQ SRRQYMEDEN TRAYDSSSHH TNWSL
Arabidopsis Description
SPL9Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.