Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01979 | Sorghum | nucleus | 85.87 | 79.9 |
| Zm00001d042319_P001 | Maize | nucleus | 82.93 | 76.04 |
| Os01t0922600-01 | Rice | nucleus | 48.53 | 58.52 |
| TraesCS3A01G432500.1 | Wheat | nucleus | 59.73 | 53.98 |
| TraesCS3D01G425800.1 | Wheat | nucleus | 60.0 | 53.7 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 58.93 | 53.38 |
| HORVU3Hr1G094730.2 | Barley | nucleus | 59.47 | 51.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.2 | 37.39 |
| GSMUA_Achr7P22940_001 | Banana | nucleus, vacuole | 30.93 | 36.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.73 | 36.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.53 | 34.86 |
| Zm00001d006091_P001 | Maize | nucleus | 36.8 | 32.62 |
| GSMUA_Achr5P25090_001 | Banana | nucleus | 35.2 | 31.96 |
| GSMUA_Achr4P16050_001 | Banana | nucleus | 29.87 | 31.11 |
| Zm00001d021056_P001 | Maize | nucleus | 38.13 | 30.75 |
| Zm00001d049822_P001 | Maize | nucleus | 34.4 | 29.86 |
| Zm00001d049824_P002 | Maize | nucleus | 34.4 | 29.66 |
| GSMUA_Achr11P... | Banana | nucleus | 32.0 | 28.92 |
| KRG94562 | Soybean | nucleus | 27.73 | 28.49 |
| KRH06918 | Soybean | nucleus | 27.47 | 28.22 |
| VIT_14s0068g01780.t01 | Wine grape | nucleus | 28.27 | 28.04 |
| Zm00001d021573_P001 | Maize | mitochondrion | 15.2 | 27.67 |
| Zm00001d006451_P001 | Maize | mitochondrion | 17.07 | 25.2 |
| Zm00001d015410_P002 | Maize | nucleus | 21.6 | 24.4 |
| Zm00001d053775_P001 | Maize | nucleus | 21.07 | 23.87 |
| Zm00001d020941_P001 | Maize | nucleus | 23.47 | 23.28 |
| Zm00001d006028_P001 | Maize | nucleus | 23.2 | 22.72 |
| Zm00001d026175_P001 | Maize | nucleus | 23.2 | 21.8 |
| Zm00001d052890_P001 | Maize | nucleus | 23.47 | 21.57 |
| Zm00001d031451_P001 | Maize | nucleus | 21.87 | 20.35 |
| Zm00001d002005_P001 | Maize | nucleus | 21.6 | 20.3 |
| Zm00001d026491_P001 | Maize | nucleus | 20.8 | 19.7 |
| Zm00001d014698_P001 | Maize | nucleus | 22.13 | 18.91 |
| Zm00001d015451_P001 | Maize | nucleus | 21.87 | 18.59 |
| Zm00001d053756_P001 | Maize | nucleus | 20.0 | 18.47 |
| Zm00001d046906_P001 | Maize | nucleus | 20.8 | 18.4 |
| Zm00001d036692_P001 | Maize | nucleus | 20.8 | 17.97 |
| Zm00001d053890_P003 | Maize | nucleus | 22.4 | 17.43 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 22.93 | 16.2 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 0.8 | 5.17 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | UniProt:A0A1D6G5U7 | ProteinID:AQK98589.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 |
| PANTHER:PTHR31251:SF63 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI000842FE4E | EnsemblPlantsGene:Zm00001d012015 |
| EnsemblPlants:Zm00001d012015_P001 | EnsemblPlants:Zm00001d012015_T001 | SEG:seg | : | : | : |
Description
SBP-transcription factor 18Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
Coordinates
chr8:-:166514041..166517345
Molecular Weight (calculated)
40032.5 Da
IEP (calculated)
8.490
GRAVY (calculated)
-0.605
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWDAKMLPA WDLGTVVVPI GGGGGALDLK LGAPTSSRAA VATAAPTLPS ANPPPPPPPP SSSAPPKRPR PGHAQQAAPA CSVQGCDADL SQCRDYHRRH
101: KVCVAHSKAP FVTVAGQQQR FCQQCSRFHL LEEFDEVKRS CRKRLDGHNR RRRKPQPDPL SPAGLFGDHH HGGVTRFTSY PHRFTTSIAK PEWGAVVKTE
201: TDAFQDQYYP AVHLNGAGAG ALFHDKDRKH LPFLTNHNNG CQPFTVTTTA SSESSSKHSN GNCALSLLSD NPTPAQAQTA TIPTAQPLVA TASQYGRLPG
301: GDDDDVSLAG MSYMRVGDSR QASNLTTSSP GPATAAATQQ HLQYHHGYYY HVSGGEQGNN SPDGAAIQAL PFSSW
101: KVCVAHSKAP FVTVAGQQQR FCQQCSRFHL LEEFDEVKRS CRKRLDGHNR RRRKPQPDPL SPAGLFGDHH HGGVTRFTSY PHRFTTSIAK PEWGAVVKTE
201: TDAFQDQYYP AVHLNGAGAG ALFHDKDRKH LPFLTNHNNG CQPFTVTTTA SSESSSKHSN GNCALSLLSD NPTPAQAQTA TIPTAQPLVA TASQYGRLPG
301: GDDDDVSLAG MSYMRVGDSR QASNLTTSSP GPATAAATQQ HLQYHHGYYY HVSGGEQGNN SPDGAAIQAL PFSSW
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.