Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046906_P001 | Maize | nucleus | 78.57 | 80.42 |
| TraesCS7D01G482300.1 | Wheat | nucleus | 49.54 | 67.82 |
| TraesCS7D01G482400.1 | Wheat | nucleus | 59.22 | 66.24 |
| TraesCS7A01G495000.1 | Wheat | nucleus | 61.29 | 65.52 |
| TraesCS7A01G495100.1 | Wheat | nucleus | 62.9 | 65.16 |
| TraesCS7D01G482500.1 | Wheat | nucleus | 62.44 | 65.14 |
| TraesCS7B01G402300.1 | Wheat | nucleus | 58.29 | 64.87 |
| Os06t0659100-00 | Rice | nucleus | 63.36 | 64.55 |
| TraesCS7B01G402200.1 | Wheat | nucleus | 61.98 | 64.51 |
| TraesCS7A01G494900.1 | Wheat | nucleus | 57.14 | 62.94 |
| TraesCS7B01G402400.1 | Wheat | nucleus | 54.38 | 58.85 |
| TraesCS7D01G482200.1 | Wheat | nucleus | 54.15 | 57.6 |
| TraesCS7A01G494800.1 | Wheat | nucleus | 51.61 | 56.14 |
| HORVU7Hr1G110980.3 | Barley | nucleus, plastid | 57.14 | 55.23 |
| Zm00001d015451_P001 | Maize | nucleus | 45.62 | 44.9 |
| Zm00001d053756_P001 | Maize | nucleus | 39.86 | 42.61 |
| Bra032662.1-P | Field mustard | nucleus | 15.44 | 42.41 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 22.35 | 38.04 |
| GSMUA_Achr10P... | Banana | nucleus | 19.82 | 37.72 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 22.81 | 36.4 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 21.89 | 34.67 |
| PGSC0003DMT400074976 | Potato | nucleus | 20.97 | 31.06 |
| Solyc10g018780.1.1 | Tomato | nucleus | 20.74 | 30.72 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 21.43 | 30.59 |
| CDX90071 | Canola | nucleus | 21.43 | 29.81 |
| Zm00001d021573_P001 | Maize | mitochondrion | 14.06 | 29.61 |
| Bra033221.1-P | Field mustard | nucleus | 22.35 | 29.57 |
| PGSC0003DMT400066955 | Potato | nucleus | 20.51 | 29.47 |
| Solyc01g090730.2.1 | Tomato | nucleus | 20.28 | 29.43 |
| KRH75288 | Soybean | nucleus | 19.12 | 28.92 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 23.5 | 28.81 |
| AT1G02065.1 | Thale cress | nucleus | 21.66 | 28.23 |
| KRH66611 | Soybean | nucleus | 21.66 | 27.98 |
| CDY15132 | Canola | nucleus | 14.98 | 27.9 |
| KRH48747 | Soybean | nucleus | 21.66 | 27.81 |
| CDY38043 | Canola | nucleus | 21.43 | 27.76 |
| Zm00001d002005_P001 | Maize | nucleus | 25.12 | 27.32 |
| Zm00001d006451_P001 | Maize | mitochondrion | 15.9 | 27.17 |
| Zm00001d026491_P001 | Maize | nucleus | 23.96 | 26.26 |
| KRH07602 | Soybean | nucleus | 12.44 | 25.0 |
| Zm00001d015410_P002 | Maize | nucleus | 16.36 | 21.39 |
| Zm00001d006091_P001 | Maize | nucleus | 20.74 | 21.28 |
| Zm00001d012015_P001 | Maize | nucleus | 17.97 | 20.8 |
| Zm00001d053775_P001 | Maize | nucleus | 15.67 | 20.54 |
| Zm00001d042319_P001 | Maize | nucleus | 19.35 | 20.54 |
| Zm00001d031451_P001 | Maize | nucleus | 18.89 | 20.35 |
| Zm00001d006028_P001 | Maize | nucleus | 17.74 | 20.1 |
| Zm00001d026175_P001 | Maize | nucleus | 18.2 | 19.8 |
| Zm00001d052890_P001 | Maize | nucleus | 18.2 | 19.36 |
| Zm00001d020941_P001 | Maize | nucleus | 16.59 | 19.05 |
| Zm00001d021056_P001 | Maize | nucleus | 20.28 | 18.92 |
| Zm00001d049824_P002 | Maize | nucleus | 18.43 | 18.39 |
| Zm00001d049822_P001 | Maize | nucleus | 18.2 | 18.29 |
| Zm00001d014698_P001 | Maize | nucleus | 17.51 | 17.31 |
| Zm00001d053890_P003 | Maize | nucleus | 17.97 | 16.18 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 17.97 | 14.69 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | EntrezGene:541995 | UniProt:A0A1D6LQH3 | ProteinID:AQK81735.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046872 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 |
| PANTHER:PTHR31251 | PANTHER:PTHR31251:SF34 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI00065E9E76 |
| EnsemblPlantsGene:Zm00001d036692 | EnsemblPlants:Zm00001d036692_P001 | EnsemblPlants:Zm00001d036692_T001 | SEG:seg | : | : |
Description
SBP-domain protein3 SBP-domain protein3
Coordinates
chr6:-:97811384..97814731
Molecular Weight (calculated)
46062.4 Da
IEP (calculated)
9.037
GRAVY (calculated)
-0.573
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTGRLNVAT SSSPGGDDFL FMPMQQHQPP PPPPPPYVGF EHGHGVAGGG SQRVAGGVQH HLYDGLDFAA SALQFQQAEA PHLHQQQLLT LPSSLGPMAP
101: PPPPPPLPMP MPVPGMPGDH VYPALGMVKR EGGGADGRIG LNLGRRTYFS PGDMMAVDRL LMRSRLGGGG GAFGLGFGFG FGGAHHLQAP PRCQAEGCKA
201: DLSGAKHYHR RHKVCEYHAK ASVVATGGKQ QRFCQQCSRF HVLSEFDEVK RSCRKRLAEH NRRRRKPPTT ASSKDAASPP ANKKPNCGSI TSSYSTDNKN
301: LNTAKSTMSS NTGSVISCLD QAAGNKQLQA RPTLTLGASP DRDQHHHQLR AMLQAQAAAG GGHHHHQEQH FITSLQVHNN DGCGGGNSSS SNNNIILSCS
401: SVCSSALPSA NGEVSDQNNG NAGGMHNLFE VDFM
101: PPPPPPLPMP MPVPGMPGDH VYPALGMVKR EGGGADGRIG LNLGRRTYFS PGDMMAVDRL LMRSRLGGGG GAFGLGFGFG FGGAHHLQAP PRCQAEGCKA
201: DLSGAKHYHR RHKVCEYHAK ASVVATGGKQ QRFCQQCSRF HVLSEFDEVK RSCRKRLAEH NRRRRKPPTT ASSKDAASPP ANKKPNCGSI TSSYSTDNKN
301: LNTAKSTMSS NTGSVISCLD QAAGNKQLQA RPTLTLGASP DRDQHHHQLR AMLQAQAAAG GGHHHHQEQH FITSLQVHNN DGCGGGNSSS SNNNIILSCS
401: SVCSSALPSA NGEVSDQNNG NAGGMHNLFE VDFM
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.