Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G482300.1 | Wheat | nucleus | 65.09 | 82.33 |
| TraesCS7B01G402300.1 | Wheat | nucleus | 79.05 | 81.28 |
| TraesCS7A01G494900.1 | Wheat | nucleus | 78.55 | 79.95 |
| TraesCS7B01G402200.1 | Wheat | nucleus | 77.81 | 74.82 |
| HORVU7Hr1G110980.3 | Barley | nucleus, plastid | 79.8 | 71.27 |
| Zm00001d046906_P001 | Maize | nucleus | 60.1 | 56.84 |
| EER88765 | Sorghum | nucleus | 62.84 | 56.76 |
| Os06t0659100-00 | Rice | nucleus | 59.1 | 55.63 |
| Zm00001d036692_P001 | Maize | nucleus | 58.85 | 54.38 |
| TraesCS6B01G180300.1 | Wheat | nucleus | 48.13 | 43.67 |
| Bra032662.1-P | Field mustard | nucleus | 16.46 | 41.77 |
| GSMUA_Achr4P20590_001 | Banana | nucleus | 24.94 | 36.76 |
| GSMUA_Achr3P00810_001 | Banana | nucleus | 23.19 | 36.47 |
| TraesCS2B01G250900.1 | Wheat | nucleus | 16.96 | 35.42 |
| GSMUA_Achr10P... | Banana | nucleus | 19.95 | 35.09 |
| GSMUA_Achr7P05010_001 | Banana | nucleus | 23.69 | 34.67 |
| PGSC0003DMT400074976 | Potato | nucleus | 22.19 | 30.38 |
| KRH75288 | Soybean | nucleus | 21.7 | 30.31 |
| Solyc10g018780.1.1 | Tomato | nucleus | 21.95 | 30.03 |
| VIT_15s0021g02300.t01 | Wine grape | nucleus | 22.69 | 29.93 |
| PGSC0003DMT400066955 | Potato | nucleus | 22.19 | 29.47 |
| CDX90071 | Canola | nucleus | 22.69 | 29.17 |
| GSMUA_Achr7P08750_001 | Banana | nucleus | 25.69 | 29.1 |
| Solyc01g090730.2.1 | Tomato | nucleus | 21.45 | 28.76 |
| Bra033221.1-P | Field mustard | nucleus | 23.44 | 28.66 |
| KRH66611 | Soybean | nucleus | 23.69 | 28.27 |
| KRH48747 | Soybean | nucleus | 23.69 | 28.11 |
| CDY38043 | Canola | nucleus | 23.44 | 28.06 |
| AT1G02065.1 | Thale cress | nucleus | 22.94 | 27.63 |
| CDY15132 | Canola | nucleus | 15.46 | 26.61 |
| TraesCS2B01G530400.1 | Wheat | nucleus | 26.68 | 26.23 |
| KRH07602 | Soybean | nucleus | 13.47 | 25.0 |
| TraesCS2B01G432700.1 | Wheat | nucleus | 18.7 | 21.25 |
| TraesCS5B01G265600.2 | Wheat | nucleus | 20.95 | 21.21 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 17.21 | 21.1 |
| TraesCS7B01G158500.1 | Wheat | nucleus | 20.7 | 20.29 |
| TraesCS3B01G468400.1 | Wheat | nucleus | 20.7 | 20.05 |
| TraesCS7B01G144900.1 | Wheat | nucleus | 19.2 | 19.95 |
| TraesCS5B01G286000.1 | Wheat | nucleus | 20.95 | 19.4 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 20.95 | 17.76 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G402400.1 | EnsemblPlantsGene:TraesCS7B01G402400 | Gene3D:4.10.1100.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR004333 |
| InterPro:IPR036893 | InterPro:SBP_dom | InterPro:SBP_sf | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF34 | PFAM:PF03110 |
| PFscan:PS51141 | SEG:seg | SUPFAM:SSF103612 | MapMan:15.5.18 | : | : |
Description
No Description!
Coordinates
chr7B:-:669139168..669141562
Molecular Weight (calculated)
43540.5 Da
IEP (calculated)
9.615
GRAVY (calculated)
-0.624
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSGGRMNTA ASDDFRFAAM QPPPYVGFEH AGIVQAGGGG DQRHQGAMMY DNFDFAAAAA AFGQFQDAPH HQMLGLPRNG SGACGLVPMA PPTMPRMQLQ
101: MPPMAMHGQG DVYPAPGMVK REGGGAGDAG RIGLNLGHRT YFSPGDMLAV DRMLMRSRLG GVFGLGFGRA HHQAPRCQVE DCKADLSGAK HYHRRHKVCE
201: YHAKAALVSA AGKQQRFCQQ CSRFHMLTEF DEAKRSCRRR LAEHNRRRRK PAPGSTAALS KDSAPPSKKP NAGAISSSYT ADNNTFSTTK STISSNTSAI
301: SCLQQSQARE VASTRPTTLT LGAPLEEDDE QQQIRNAMQL HHHQEQQHFI TSLLHNNINN SNILSCSSVS ALQHDAIGGG GGQWRGLRPE QRQGQQQHAY
401: V
101: MPPMAMHGQG DVYPAPGMVK REGGGAGDAG RIGLNLGHRT YFSPGDMLAV DRMLMRSRLG GVFGLGFGRA HHQAPRCQVE DCKADLSGAK HYHRRHKVCE
201: YHAKAALVSA AGKQQRFCQQ CSRFHMLTEF DEAKRSCRRR LAEHNRRRRK PAPGSTAALS KDSAPPSKKP NAGAISSSYT ADNNTFSTTK STISSNTSAI
301: SCLQQSQARE VASTRPTTLT LGAPLEEDDE QQQIRNAMQL HHHQEQQHFI TSLLHNNINN SNILSCSSVS ALQHDAIGGG GGQWRGLRPE QRQGQQQHAY
401: V
001: MLDYEWDNPS SIVLSGDERN PDSDPTRSSF SFFDPISHYN NDHRHITISP PLLSSFSNQQ QQHHLTLYGQ TNSNNQFLHH HHHHHSLYGS TTTTTPYGAS
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
101: DPIYHPHSSA PPASLFSYDQ TGPGSGSGSS YNFLIPKTEV DFTSNRIGLN LGGRTYFSAA DDDFVSRLYR RSRPGESGMA NSLSTPRCQA EGCNADLSHA
201: KHYHRRHKVC EFHSKASTVV AAGLSQRFCQ QCSRFHLLSE FDNGKRSCRK RLADHNRRRR KCHQSASATQ DTGTGKTTPK SPNDSGVKAS SSPSSNAPPT
301: ISLECFRQRQ FQTTASSSTS ASSSSNSMFF SSG
Arabidopsis Description
SPL8Squamosa promoter-binding-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.