Factsheet for TraesCS6B01G138400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G271000.1
TraesCS4A01G466700.1
TraesCS4B01G043100.1
TraesCS4D01G040400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27360.1	TraesCS4A01G271000.1	AT1G14920.1	22942378
AT1G27360.1	TraesCS4A01G466700.1	AT1G14920.1	22942378
AT1G27360.1	TraesCS4B01G043100.1	AT1G14920.1	22942378
AT1G27360.1	TraesCS4D01G040400.1	AT1G14920.1	22942378
AT1G27360.1	TraesCS4A01G271000.1	AT2G01570.1	22942378
AT1G27360.1	TraesCS4A01G466700.1	AT2G01570.1	22942378
AT1G27360.1	TraesCS4B01G043100.1	AT2G01570.1	22942378
AT1G27360.1	TraesCS4D01G040400.1	AT2G01570.1	22942378
AT1G27370.1	TraesCS4A01G271000.1	AT1G14920.1	22942378
AT1G27370.1	TraesCS4A01G466700.1	AT1G14920.1	22942378
AT1G27370.1	TraesCS4B01G043100.1	AT1G14920.1	22942378
AT1G27370.1	TraesCS4D01G040400.1	AT1G14920.1	22942378

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G098500.1	Wheat	nucleus	97.25	97.25
TraesCS6A01G110100.2	Wheat	nucleus	95.98	95.58
HORVU6Hr1G019700.3	Barley	nucleus	93.66	87.38
Os02t0139400-01	Rice	nucleus	41.01	68.79
EES04495	Sorghum	nucleus	63.85	62.92
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	59.2	52.73
Zm00001d053890_P003	Maize	nucleus	53.7	52.7
GSMUA_Achr5P21990_001	Banana	nucleus	40.17	43.88
VIT_01s0010g03710.t01	Wine grape	nucleus	40.38	40.04
VIT_11s0065g00170.t01	Wine grape	nucleus	39.11	39.78
KRH31506	Soybean	nucleus	35.73	38.15
KRG97402	Soybean	nucleus	34.67	37.88
Bra033671.1-P	Field mustard	nucleus	28.75	37.57
TraesCS6B01G183400.1	Wheat	nucleus	25.58	37.0
PGSC0003DMT400084734	Potato	nucleus	36.15	36.77
Solyc05g015510.2.1	Tomato	nucleus	35.52	36.29
PGSC0003DMT400068752	Potato	nucleus	29.18	35.84
Solyc04g045560.2.1	Tomato	nucleus	26.43	35.71
AT1G27370.1	Thale cress	nucleus	29.81	35.61
CDY27611	Canola	nucleus	27.27	35.34
Bra032822.1-P	Field mustard	nucleus	27.27	35.34
Bra027478.1-P	Field mustard	nucleus	28.96	35.13
CDY32959	Canola	nucleus	28.96	35.13
Bra032823.1-P	Field mustard	nucleus	24.31	35.06
CDY27612	Canola	nucleus	24.31	34.95
CDY03913	Canola	nucleus	27.27	34.77
CDX84928	Canola	nucleus	26.64	34.62
CDY43604	Canola	nucleus	27.91	34.29
CDX84927	Canola	nucleus	26.43	34.06
AT5G43270.1	Thale cress	nucleus	30.02	33.89
CDY03914	Canola	nucleus	26.43	33.6
Bra030040.1-P	Field mustard	nucleus	27.7	33.59
AT1G27360.1	Thale cress	nucleus	27.91	33.59
CDY15713	Canola	nucleus	27.48	33.33
Bra030041.1-P	Field mustard	nucleus	26.22	33.16
CDY15712	Canola	nucleus	26.22	33.16
CDY67700	Canola	nucleus	23.89	32.66
Bra010949.1-P	Field mustard	nucleus	24.74	31.97
CDY11816	Canola	nucleus	24.52	31.78
TraesCS2B01G250900.1	Wheat	nucleus	12.9	31.77
CDY47812	Canola	nucleus	31.92	29.26
CDY22356	Canola	nucleus	31.92	29.09
TraesCS2B01G432700.1	Wheat	nucleus	17.55	23.51
TraesCS7B01G144900.1	Wheat	nucleus	19.03	23.32
TraesCS5B01G286000.1	Wheat	nucleus	20.72	22.63
TraesCS5B01G265600.2	Wheat	nucleus	18.6	22.22
TraesCS2B01G530400.1	Wheat	nucleus	19.03	22.06
TraesCS7B01G158500.1	Wheat	nucleus	19.03	22.0
TraesCS7B01G402300.1	Wheat	nucleus	17.34	21.03
TraesCS7B01G402400.1	Wheat	nucleus	17.76	20.95
TraesCS3B01G468400.1	Wheat	nucleus	17.76	20.29
TraesCS7B01G402200.1	Wheat	nucleus	17.34	19.66
TraesCS6B01G180300.1	Wheat	nucleus	17.34	18.55

Protein Annotations

EnsemblPlants:TraesCS6B01G138400.1	EnsemblPlantsGene:TraesCS6B01G138400	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR004333
InterPro:IPR036893	InterPro:SBP_dom	InterPro:SBP_sf	PANTHER:PTHR31251	PANTHER:PTHR31251:SF24	PFAM:PF03110
PFscan:PS51141	SEG:seg	SUPFAM:SSF103612	MapMan:15.5.18	:	:

Description

No Description!

Coordinates

chr6B:+:135859544..135862635

Molecular Weight (calculated)

51203.0 Da

IEP (calculated)

9.531

GRAVY (calculated)

-0.635

Length

473 amino acids

Sequence
(BLAST)

001: MGSFGMEWNQ RSSVLWDWEN FPPIGNNPKN AMQADPRFAG VAATMGNEPL HSSGGSGTFS SSSEMGYGSS KSSMSVSIDS SSRAGNNMEF RFAPVKNPDR
101: NTSKNPELGK VDNTRTGTSP SSVVAVSSGE PVIGLKLGKR TYFEDVCGGQ SVKSLPSGAA SAPNKSPALG KKAKAEQQKP HNSYCQVEGC KADLSSVKDY
201: HRKHRVCELH SKAPKVVVAG LERRFCQQCS RFHALAEFDQ KKRSCRRRLN DHNSRRRKPQ PEAISFSSSR MSTMFYDARQ QPNFLFGQAP YVQMRSCGSS
301: SWDDPGGFKV THTKAPWLKP TTAAGVHGMH LSSQQMSDNI MPHGAHHGFD GFMAFKGTCI KFPNQGVQAS AVASDSSGAP DLQHALSLLS SNPVGAANLQ
401: PSPQMHSGVA AIAGAPNPAM HVLGSSTGLW LDGGQPLDDH PRFQVFERLG DHDSELQLPK PSYDHASHFD RMH

Best Arabidopsis Sequence Match ( AT5G43270.2 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.