Factsheet for VIT_01s0010g03710.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0065g00170.t01	Wine grape	nucleus	53.04	54.41
PGSC0003DMT400084734	Potato	nucleus	51.78	53.12
Os02t0139400-01	Rice	nucleus	31.03	52.48
Solyc05g015510.2.1	Tomato	nucleus	50.73	52.27
Bra033671.1-P	Field mustard	nucleus	37.53	49.45
GSMUA_Achr9P14160_001	Banana	nucleus	45.49	47.38
GSMUA_Achr4P12470_001	Banana	nucleus	34.38	46.86
Bra027478.1-P	Field mustard	nucleus	37.74	46.15
CDY32959	Canola	nucleus	37.74	46.15
CDY43604	Canola	nucleus	36.9	45.71
AT5G43270.1	Thale cress	nucleus	39.83	45.35
GSMUA_Achr5P22630_001	Banana	nucleus	42.98	45.15
GSMUA_Achr4P05720_001	Banana	nucleus	32.7	45.09
GSMUA_Achr9P23140_001	Banana	nucleus	39.2	44.95
GSMUA_Achr6P36010_001	Banana	nucleus	40.88	44.52
GSMUA_Achr3P27750_001	Banana	nucleus	43.61	44.35
PGSC0003DMT400068752	Potato	nucleus	34.8	43.12
VIT_10s0003g00050.t01	Wine grape	nucleus	12.58	42.86
GSMUA_Achr5P21990_001	Banana	nucleus	38.57	42.49
Solyc04g045560.2.1	Tomato	nucleus	31.03	42.29
Os02t0174100-02	Rice	nucleus	22.01	41.83
GSMUA_Achr3P05360_001	Banana	nucleus	40.67	41.81
GSMUA_Achr10P...	Banana	nucleus	44.03	41.67
TraesCS6B01G183400.1	Wheat	nucleus	28.3	41.28
TraesCS6D01G145200.1	Wheat	nucleus	28.09	41.23
TraesCS6A01G155300.1	Wheat	nucleus	28.3	41.16
HORVU6Hr1G031450.6	Barley	nucleus	28.09	41.1
OQU77017	Sorghum	nucleus	37.74	40.91
TraesCS6A01G110100.2	Wheat	nucleus	40.67	40.84
TraesCS6D01G098500.1	Wheat	nucleus	40.46	40.8
EES04609	Sorghum	nucleus	28.72	40.65
TraesCS6B01G138400.1	Wheat	nucleus	40.04	40.38
Zm00001d015410_P002	Maize	nucleus	28.09	40.36
Zm00001d053775_P001	Maize	nucleus	27.67	39.88
Os06t0703500-02	Rice	nucleus	39.62	39.79
Zm00001d014698_P001	Maize	nucleus	36.27	39.41
GSMUA_Achr10P...	Banana	nucleus	40.04	39.22
CDY47812	Canola	nucleus	41.93	38.76
EES04495	Sorghum	nucleus	38.78	38.54
CDY22356	Canola	nucleus	41.93	38.54
HORVU6Hr1G019700.3	Barley	nucleus	39.62	37.28
GSMUA_Achr8P23820_001	Banana	nucleus	38.57	34.91
VIT_12s0028g03350.t01	Wine grape	nucleus	12.37	34.91
Os06t0663500-00	Rice	nucleus	24.95	34.69
Zm00001d015233_P001	Maize	mitochondrion, nucleus, plastid	37.53	33.71
Zm00001d053890_P003	Maize	nucleus	33.12	32.78
VIT_08s0007g06270.t01	Wine grape	nucleus	23.9	30.08
VIT_19s0014g02350.t01	Wine grape	nucleus	12.58	29.41
VIT_04s0210g00170.t01	Wine grape	nucleus	11.74	27.05
VIT_14s0068g01780.t01	Wine grape	nucleus	20.13	25.4
VIT_15s0021g02300.t01	Wine grape	nucleus	16.14	25.33
VIT_01s0010g03910.t01	Wine grape	nucleus	20.55	25.19
VIT_15s0021g02290.t01	Wine grape	nucleus	19.5	23.31
VIT_17s0000g01260.t01	Wine grape	nucleus	19.5	23.19
VIT_17s0000g05020.t01	Wine grape	nucleus	21.38	18.31
VIT_01s0011g00130.t01	Wine grape	nucleus	16.77	15.78

Protein Annotations

EntrezGene:100254075	wikigene:100254075	MapMan:15.5.18	Gene3D:4.10.1100.10	ProteinID:CCB51304	ProteinID:CCB51304.1
UniProt:F6HGB1	EMBL:FN595754	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	EntrezGene:LOC100254075	wikigene:LOC100254075	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251
PANTHER:PTHR31251:SF30	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	UniParc:UPI0001982B4E	ArrayExpress:VIT_01s0010g03710
EnsemblPlantsGene:VIT_01s0010g03710	EnsemblPlants:VIT_01s0010g03710.t01	unigene:Vvi.21308	RefSeq:XP_002271312	RefSeq:XP_002271312.1	RefSeq:XP_010655960.1
RefSeq:XP_010655962.1	RefSeq:XP_010655967.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:21064260..21071687

Molecular Weight (calculated)

52243.0 Da

IEP (calculated)

8.316

GRAVY (calculated)

-0.623

Length

477 amino acids

Sequence
(BLAST)

001: MISFSMMEWN AKAPVQWDWE NLDIFNAKST EIPKKLQSDW EIEGEGGIDT GSFYSSGCGA GSGGSGSDLG HAYSSKSSKS ASIDSSSKVG IKTSNFTFEA
101: FQDFSQDFNK KRDLERAEPT GSSPNLEASI GSGEPLIGLK LGKRTYFEDV SAGANAKGSV FSVIPISSDT TAKRSRLSCQ NAHVSRCQVE GCNLDLSTAK
201: DYHRKHRVCE SHTKCPKVIV GGLERRFCQQ CSRFHSLSEF DEKKRSCRRR LSDHNARRRK PQPEGIQSNS ARLSSFYGGK QQMSLVLSSV PIVHTRPAVN
301: PSWEGTCSKF TQTKGLVRPG NTGGIDRQLH LPGSELQNGI STLCHDSSRL LHSKGAIAEV LNQGLGDSMI SSNLDTSQDL RRALSLLSTN SWGSCETQPI
401: PSDHPMHVNQ TSMPQSIMHA VSQGMLHSTS EHWRTELPST DSRVHILPSQ GDGNTHFQEF KLFKAPYESG FSSGQLN

Best Arabidopsis Sequence Match ( AT5G43270.2 )
(BLAST)

001: MECNAKPPFQ WELENLISFG TSTAEVPRKL KPMEWEIDGF DCTSLYSSSF AYAGSSGSDI AHAFSKSSKS TSISSSSAEV RTHNFTSETG ESLPGEFAKG
101: IDTSPSLELS FGSGDPVLGL KLGKRTYFED FWEVENAKGL GLPVTLASSS VSPVKKSKSI PQRLQTPHCQ VEGCNLDLSS AKDYHRKHRI CENHSKFPKV
201: VVSGVERRFC QQCSRFHCLS EFDEKKRSCR RRLSDHNARR RKPNPGRTYD GKPQVDFVWN RFALIHPRSE EKFIWPSSKH VPSRVLMPQP AKTEISDTEH
301: NRFGLLDPKT KTARAELFSK EKVTISSHMG ASQDLDGALS LLSNSTTWVS SSDQPRRFTL DHHPSSNLQP VAHRSAAQLN SVSGYWQPDP PAVEGPTALH
401: RNGVGQFNEN YFSLNQFYN

Arabidopsis Description

SPL2Squamosa promoter-binding-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.