Factsheet for VIT_17s0000g01260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63786	Soybean	nucleus	49.88	53.91
KRH54164	Soybean	nucleus	51.12	49.52
VIT_01s0010g03910.t01	Wine grape	nucleus	47.63	49.1
Solyc05g015840.2.1	Tomato	nucleus	35.91	46.15
PGSC0003DMT400056374	Potato	nucleus	36.66	46.08
CDX84872	Canola	nucleus	38.9	45.75
CDY45826	Canola	nucleus	38.9	45.75
Bra022766.1-P	Field mustard	nucleus	38.9	45.61
CDX71667	Canola	nucleus	40.4	45.13
AT5G50670.2	Thale cress	nucleus	39.9	44.57
AT5G50570.2	Thale cress	nucleus	39.9	44.57
CDY34028	Canola	nucleus	37.91	43.68
VIT_10s0003g00050.t01	Wine grape	nucleus	14.46	41.43
VIT_14s0068g01780.t01	Wine grape	nucleus	37.91	40.21
VIT_12s0028g03350.t01	Wine grape	nucleus	14.21	33.73
VIT_04s0210g00170.t01	Wine grape	nucleus	15.71	30.43
VIT_19s0014g02350.t01	Wine grape	nucleus	14.46	28.43
VIT_15s0021g02300.t01	Wine grape	nucleus	18.2	24.01
VIT_08s0007g06270.t01	Wine grape	nucleus	22.19	23.48
VIT_15s0021g02290.t01	Wine grape	nucleus	20.7	20.8
VIT_17s0000g05020.t01	Wine grape	nucleus	28.18	20.29
VIT_01s0010g03710.t01	Wine grape	nucleus	23.19	19.5
VIT_11s0065g00170.t01	Wine grape	nucleus	20.45	17.63
VIT_01s0011g00130.t01	Wine grape	nucleus	19.95	15.78

Protein Annotations

EntrezGene:100261045	wikigene:100261045	MapMan:15.5.18	Gene3D:4.10.1100.10	EMBL:AM464532	ProteinID:CAN77059
ProteinID:CAN77059.1	ProteinID:CCB43331	ProteinID:CCB43331.1	UniProt:F6GSW2	EMBL:FN594950	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	EntrezGene:LOC100261045	wikigene:LOC100261045
PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF29	InterPro:SBP_dom	InterPro:SBP_sf
SUPFAM:SSF103612	UniParc:UPI00021099F8	ArrayExpress:VIT_17s0000g01260	EnsemblPlantsGene:VIT_17s0000g01260	EnsemblPlants:VIT_17s0000g01260.t01	unigene:Vvi.17574
RefSeq:XP_002280160	RefSeq:XP_002280160.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:-:904847..908446

Molecular Weight (calculated)

43805.3 Da

IEP (calculated)

7.398

GRAVY (calculated)

-0.522

Length

401 amino acids

Sequence
(BLAST)

001: MKHNGTCCVL SIHLGNEWLE RAYQFSSEAL TPSWDLTELE TEAIPNIDVV GGTSSSGVHK TGGDFSIDLK LGQVSNPSSD FADKLKEQKF SSIAAPLPSG
101: SSKRARATNN GSQTVSCLVD GCNSDLSNCR EYHRRHKVCE LHSKTAQVTI GGHTQRFCQQ CSRFHSLEEF DEGKRSCRKR LDGHNRRRRK PQPEPLSRPG
201: SFLTNYQGSG LLPFSSPHLY PTTAMMSPNW GAGLVKTEEG AILYNQHQQL PLLEKQHLHL GSSSSFYKGG KQLTFLQADH PSLSNYTTSE APVCQPLAGH
301: GCKMFYDRLT NQVLESDCAL SLLSSPQTQS SGISLSNMVQ PNSVSLAQPS APSLHYNNQP VDSVLVSNAG VTDIHCPGIF HIGSDGSSGN EAPQKLPFFW
401: D

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.