Factsheet for Bra022766.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84872	Canola	nucleus	99.71	100.0
CDY45826	Canola	nucleus	95.32	95.6
AT5G50670.2	Thale cress	nucleus	81.29	77.44
AT5G50570.2	Thale cress	nucleus	81.29	77.44
VIT_17s0000g01260.t01	Wine grape	nucleus	45.61	38.9
Bra005470.1-P	Field mustard	nucleus	15.79	38.03
KRH59812	Soybean	nucleus	42.98	37.69
Solyc05g015840.2.1	Tomato	nucleus	34.21	37.5
PGSC0003DMT400056374	Potato	nucleus	34.5	36.99
KRH63786	Soybean	nucleus	40.06	36.93
KRH41121	Soybean	nucleus	42.69	36.87
Bra021880.1-P	Field mustard	nucleus	14.91	36.17
VIT_01s0010g03910.t01	Wine grape	nucleus	39.47	34.7
KRH54164	Soybean	nucleus	41.52	34.3
Bra032662.1-P	Field mustard	nucleus	15.79	34.18
Bra039656.1-P	Field mustard	nucleus	16.08	30.56
Bra038101.1-P	Field mustard	nucleus	15.79	29.51
Bra027265.1-P	Field mustard	nucleus	15.2	29.05
Bra021094.1-P	Field mustard	nucleus	14.33	27.84
Bra004363.1-P	Field mustard	nucleus	21.93	24.92
Bra038324.1-P	Field mustard	nucleus	23.68	24.85
Bra003305.1-P	Field mustard	nucleus	21.05	22.78
Bra016891.1-P	Field mustard	nucleus	23.68	22.31
Bra014599.1-P	Field mustard	nucleus	19.59	22.19
Bra004674.1-P	Field mustard	nucleus	23.1	21.41
Bra033221.1-P	Field mustard	nucleus	19.88	20.73
Bra027478.1-P	Field mustard	nucleus	23.1	20.26
Bra033671.1-P	Field mustard	nucleus	21.34	20.17
Bra032823.1-P	Field mustard	nucleus	19.01	19.82
Bra030041.1-P	Field mustard	nucleus	21.64	19.79
Bra010949.1-P	Field mustard	nucleus	21.05	19.67
Bra032822.1-P	Field mustard	nucleus	20.76	19.45
Bra030040.1-P	Field mustard	nucleus	21.93	19.23

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	EnsemblPlantsGene:Bra022766	EnsemblPlants:Bra022766.1	EnsemblPlants:Bra022766.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333	InterPro:IPR036893	UniProt:M4E1W6	PFAM:PF03110
PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF29	InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612
UniParc:UPI00025401CC	SEG:seg	:	:	:	:

Description

AT5G50670 (E=9e-116) | squamosa promoter-binding protein, putative

Coordinates

chrA03:+:6912251..6913579

Molecular Weight (calculated)

37437.3 Da

IEP (calculated)

8.169

GRAVY (calculated)

-0.654

Length

342 amino acids

Sequence
(BLAST)

001: MDWNFKLSSG YFSEFDQESV PDLTPVDASI SFGGSSSPPR RLQPKGDLPF DLKLGRNIGH SSSSSSSSAF GKTEKVISLS KLKESASEAS RSSKRTRGNN
101: QIPICLVDGC DSDFSNCREY HKRHKVCDVH SKTPVVTING NNQRFCQQCS RFHGLEEFDE GKKSCRKRLD GHNRRRRKPQ PDHTDRTATF FQGSKLLDFS
201: SSPHVFPTTS VVSPSWGSGP VSVAMANGSS YGQNQSYVGS FPAKTGITFP ISSSPNSRGK QFPFLQEEED SSRMTSCIHD SDCALSLLSS SSSHLLQPQP
301: PLSLSQETVF YGSGLFENAS AVSDGSGNEA VPLPQTFPPF HW

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.