Factsheet for Solyc05g015840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056374	Potato	nucleus	96.47	94.36
VIT_01s0010g03910.t01	Wine grape	nucleus	56.73	45.5
Solyc10g009080.2.1	Tomato	nucleus	16.99	39.26
Solyc02g077920.2.1	Tomato	nucleus	16.99	38.97
Solyc07g062980.2.1	Tomato	nucleus	15.71	37.12
Solyc07g053810.2.1	Tomato	nucleus	17.31	36.73
VIT_17s0000g01260.t01	Wine grape	nucleus	46.15	35.91
KRH63786	Soybean	nucleus	42.31	35.58
KRH59812	Soybean	nucleus	43.27	34.62
CDY45826	Canola	nucleus	37.5	34.31
CDX84872	Canola	nucleus	37.5	34.31
Bra022766.1-P	Field mustard	nucleus	37.5	34.21
KRH41121	Soybean	nucleus	43.27	34.09
CDY34028	Canola	nucleus	34.94	31.32
AT5G50570.2	Thale cress	nucleus	35.9	31.2
AT5G50670.2	Thale cress	nucleus	35.9	31.2
CDX71667	Canola	nucleus	35.9	31.2
KRH54164	Soybean	nucleus	40.71	30.68
Solyc03g114850.2.1	Tomato	nucleus	19.23	22.64
Solyc10g078700.1.1	Tomato	nucleus	25.96	21.77
Solyc04g045560.2.1	Tomato	nucleus	24.36	21.71
Solyc10g018780.1.1	Tomato	nucleus	19.23	20.48
Solyc01g090730.2.1	Tomato	nucleus	18.91	19.73
Solyc12g038520.1.1	Tomato	nucleus	27.88	19.46
Solyc05g015510.2.1	Tomato	nucleus	24.04	16.2
Solyc05g012040.2.1	Tomato	nucleus	27.24	15.23

Protein Annotations

MapMan:15.5.18	Gene3D:4.10.1100.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046872	InterPro:IPR004333
InterPro:IPR036893	UniProt:K4BYV0	PFAM:PF03110	PFscan:PS51141	PANTHER:PTHR31251	PANTHER:PTHR31251:SF29
InterPro:SBP_dom	InterPro:SBP_sf	SUPFAM:SSF103612	EnsemblPlantsGene:Solyc05g015840.2	EnsemblPlants:Solyc05g015840.2.1	UniParc:UPI0002766C6F
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:12394400..12397051

Molecular Weight (calculated)

34289.8 Da

IEP (calculated)

8.114

GRAVY (calculated)

-0.653

Length

312 amino acids

Sequence
(BLAST)

001: MESSSSSSKR AKAPGNIAHC LVDGCNADLS ECREYHRRHK VCEVHSKTAK VTIAGRDQRF CQQCSRFHSL VEFDDGKRSC RKRLDGHNRR RRKPQPDSMA
101: KNSGILFGQQ GTKLLSFSSQ QIFPSAVVSS AWAGVVKTDS DMVLYNNQSH MNGMDSQNSF PDSSGHSYKG GSQFQFMQGS DRSLTEAPLF EHPTSAAGIS
201: SSGQKIFSSG LNDIVDSDRA LSLLSSAPAV TREIGLSHMV QQPASIPRSQ SHGLQYDGLS HFPFAQDFNS KPQDSHVSNS SSPLHFHDML QNAQDESSTI
301: PASQQTLAFM WD

Best Arabidopsis Sequence Match ( AT5G50670.2 )
(BLAST)

001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE

Arabidopsis Description

SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.