Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G50670.2 | Thale cress | nucleus | 81.89 | 81.89 |
| AT5G50570.2 | Thale cress | nucleus | 81.89 | 81.89 |
| CDX84872 | Canola | nucleus | 76.04 | 80.06 |
| CDY45826 | Canola | nucleus | 75.77 | 79.77 |
| CDY34028 | Canola | nucleus | 75.49 | 77.87 |
| VIT_17s0000g01260.t01 | Wine grape | nucleus | 45.13 | 40.4 |
| CDY17204 | Canola | nucleus | 15.6 | 39.44 |
| CDY27935 | Canola | nucleus | 15.88 | 38.78 |
| KRH59812 | Soybean | nucleus | 42.06 | 38.72 |
| KRH63786 | Soybean | nucleus | 39.83 | 38.54 |
| KRH41121 | Soybean | nucleus | 42.06 | 38.13 |
| CDY57212 | Canola | nucleus | 14.76 | 37.59 |
| CDY50515 | Canola | nucleus | 16.43 | 37.58 |
| CDY24113 | Canola | nucleus | 16.71 | 37.27 |
| KRH54164 | Soybean | nucleus | 41.78 | 36.23 |
| CDY37684 | Canola | nucleus | 14.21 | 36.17 |
| Solyc05g015840.2.1 | Tomato | nucleus | 31.2 | 35.9 |
| PGSC0003DMT400056374 | Potato | nucleus | 31.75 | 35.74 |
| VIT_01s0010g03910.t01 | Wine grape | nucleus | 37.33 | 34.45 |
| CDY61210 | Canola | nucleus | 16.43 | 32.96 |
| CDY25876 | Canola | nucleus | 15.88 | 32.39 |
| CDX97645 | Canola | nucleus | 15.88 | 31.84 |
| CDX98540 | Canola | nucleus | 15.6 | 31.28 |
| CDY20128 | Canola | nucleus | 14.76 | 30.11 |
| CDY32310 | Canola | nucleus | 14.48 | 29.55 |
| CDX79544 | Canola | nucleus | 15.32 | 29.41 |
| CDX95958 | Canola | nucleus | 22.28 | 26.76 |
| CDY50300 | Canola | nucleus | 23.96 | 26.22 |
| CDX96251 | Canola | nucleus | 23.68 | 25.91 |
| CDX81606 | Canola | nucleus | 23.4 | 25.23 |
| CDY69014 | Canola | nucleus | 22.28 | 25.08 |
| CDY61750 | Canola | nucleus | 20.61 | 24.03 |
| CDX98259 | Canola | nucleus | 20.89 | 23.08 |
| CDY06881 | Canola | nucleus | 23.12 | 22.86 |
| CDX79888 | Canola | nucleus | 23.4 | 22.83 |
| CDY53504 | Canola | nucleus | 23.4 | 22.7 |
| CDY47656 | Canola | nucleus | 20.33 | 22.53 |
| CDX90071 | Canola | nucleus | 19.22 | 22.12 |
| CDY14818 | Canola | nucleus | 22.56 | 22.07 |
| CDY27612 | Canola | nucleus | 20.06 | 21.88 |
| CDX67715 | Canola | nucleus | 18.94 | 21.52 |
| CDX84927 | Canola | nucleus | 21.73 | 21.25 |
| CDY43604 | Canola | nucleus | 22.56 | 21.04 |
| CDY03913 | Canola | nucleus | 21.73 | 21.02 |
| CDY67700 | Canola | nucleus | 20.06 | 20.81 |
| CDX84928 | Canola | nucleus | 20.89 | 20.6 |
| CDY15712 | Canola | nucleus | 21.45 | 20.59 |
| CDY27611 | Canola | nucleus | 20.89 | 20.55 |
| CDY03914 | Canola | nucleus | 21.17 | 20.43 |
| CDY32959 | Canola | nucleus | 22.01 | 20.26 |
| CDY15713 | Canola | nucleus | 22.01 | 20.26 |
| CDY38043 | Canola | nucleus | 18.66 | 20.0 |
| CDY11816 | Canola | nucleus | 20.33 | 20.0 |
| CDY15132 | Canola | nucleus | 11.14 | 17.17 |
| CDY22356 | Canola | nucleus | 23.4 | 16.18 |
| CDY47812 | Canola | nucleus | 22.84 | 15.89 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.95 | 12.07 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078C463 | EnsemblPlants:CDX71667 | ProteinID:CDX71667 | ProteinID:CDX71667.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00152313001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EC0B4B | SEG:seg | : | : | : | : |
Description
BnaC09g27080D
Coordinates
chrLK031794:+:2556803..2558026
Molecular Weight (calculated)
39164.7 Da
IEP (calculated)
8.357
GRAVY (calculated)
-0.530
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWNFKLSSG YFSEFDQESV PDIAPIDGSI SFGGSSSPRL QPEGDFSFDL KLGRNIGNSS SSAYGNTEQV PSLCKWKESK MAKPRSSGSS KRKRGNAIGN
101: SQIPICLVDG CDSDFSNCRE YHKRHKVCEV HSKTPVVTIN GHKQRFCQQC SRFHALEEFD EGKRSCRKRL DGHNRRRRKP QPDHISRPAN FFAGFQGSKM
201: LEFSSSSYVF PTTSVASPSW GNGLVSVAMA NGSSNGQNQG VSGSSPAKTG IMFPISSSSS SRRKLLPSLQ EQESSRTAPL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLYQEAA ETGFYGLGLF ENATAVSDGS VISSIEAVAL PQTFPFHWE
101: SQIPICLVDG CDSDFSNCRE YHKRHKVCEV HSKTPVVTIN GHKQRFCQQC SRFHALEEFD EGKRSCRKRL DGHNRRRRKP QPDHISRPAN FFAGFQGSKM
201: LEFSSSSYVF PTTSVASPSW GNGLVSVAMA NGSSNGQNQG VSGSSPAKTG IMFPISSSSS SRRKLLPSLQ EQESSRTAPL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLYQEAA ETGFYGLGLF ENATAVSDGS VISSIEAVAL PQTFPFHWE
001: MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
101: CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG
201: GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS
301: SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL PQTFPFHWE
Arabidopsis Description
SPL13ASquamosa promoter-binding-like protein 13B [Source:UniProtKB/Swiss-Prot;Acc:P0DI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.