Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97645 | Canola | nucleus | 98.88 | 98.88 |
| AT3G15270.1 | Thale cress | nucleus | 84.36 | 83.43 |
| CDY20128 | Canola | nucleus | 78.21 | 79.55 |
| CDY32310 | Canola | nucleus | 77.65 | 78.98 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 25.14 | 77.59 |
| CDY25876 | Canola | nucleus | 68.16 | 69.32 |
| CDY24113 | Canola | nucleus | 60.89 | 67.7 |
| CDY50515 | Canola | nucleus | 58.1 | 66.24 |
| CDY61210 | Canola | nucleus | 65.36 | 65.36 |
| PGSC0003DMT400076399 | Potato | nucleus | 39.11 | 51.47 |
| VIT_10s0003g00050.t01 | Wine grape | nucleus | 40.22 | 51.43 |
| CDY17204 | Canola | nucleus | 40.22 | 50.7 |
| Solyc10g009080.2.1 | Tomato | nucleus | 37.99 | 50.37 |
| PGSC0003DMT400058753 | Potato | nucleus | 37.99 | 50.37 |
| CDY27935 | Canola | nucleus | 41.34 | 50.34 |
| Solyc02g077920.2.1 | Tomato | nucleus | 36.87 | 48.53 |
| CDY57212 | Canola | nucleus | 35.75 | 45.39 |
| KRH50085 | Soybean | nucleus | 36.87 | 45.21 |
| CDY37684 | Canola | nucleus | 35.2 | 44.68 |
| KRH21401 | Soybean | nucleus | 34.08 | 44.2 |
| KRH20415 | Soybean | nucleus | 34.64 | 43.66 |
| KRH10909 | Soybean | nucleus | 33.52 | 43.48 |
| CDX79544 | Canola | nucleus | 35.2 | 33.69 |
| EER97257 | Sorghum | nucleus | 36.87 | 30.7 |
| Os07t0505200-01 | Rice | nucleus | 36.87 | 30.56 |
| Zm00001d006451_P001 | Maize | mitochondrion | 37.99 | 26.77 |
| Zm00001d021573_P001 | Maize | mitochondrion | 30.73 | 26.7 |
| KXG36284 | Sorghum | nucleus | 29.61 | 24.31 |
| CDX95958 | Canola | nucleus | 31.28 | 18.73 |
| CDX90071 | Canola | nucleus | 31.28 | 17.95 |
| CDY38043 | Canola | nucleus | 32.96 | 17.61 |
| CDY61750 | Canola | nucleus | 30.17 | 17.53 |
| CDY50300 | Canola | nucleus | 31.28 | 17.07 |
| CDY69014 | Canola | nucleus | 30.17 | 16.93 |
| CDX96251 | Canola | nucleus | 30.73 | 16.77 |
| CDY47656 | Canola | nucleus | 30.17 | 16.67 |
| CDX98259 | Canola | nucleus | 30.17 | 16.62 |
| CDX81606 | Canola | nucleus | 30.73 | 16.52 |
| CDY06881 | Canola | nucleus | 31.84 | 15.7 |
| CDX71667 | Canola | nucleus | 31.28 | 15.6 |
| CDX67715 | Canola | nucleus | 27.37 | 15.51 |
| CDY14818 | Canola | nucleus | 31.28 | 15.26 |
| CDY45826 | Canola | nucleus | 29.05 | 15.25 |
| CDY34028 | Canola | nucleus | 29.61 | 15.23 |
| CDY67700 | Canola | nucleus | 29.05 | 15.03 |
| CDY15132 | Canola | nucleus | 19.55 | 15.02 |
| CDX84872 | Canola | nucleus | 28.49 | 14.96 |
| CDX79888 | Canola | nucleus | 30.73 | 14.95 |
| CDY53504 | Canola | nucleus | 30.73 | 14.86 |
| CDY27612 | Canola | nucleus | 26.82 | 14.59 |
| CDX84928 | Canola | nucleus | 28.49 | 14.01 |
| CDY11816 | Canola | nucleus | 28.49 | 13.97 |
| CDY27611 | Canola | nucleus | 28.49 | 13.97 |
| CDY03913 | Canola | nucleus | 28.49 | 13.75 |
| CDX84927 | Canola | nucleus | 27.93 | 13.62 |
| CDY15713 | Canola | nucleus | 28.49 | 13.08 |
| CDY32959 | Canola | nucleus | 27.93 | 12.82 |
| CDY43604 | Canola | nucleus | 27.37 | 12.73 |
| CDY15712 | Canola | nucleus | 26.26 | 12.57 |
| CDY03914 | Canola | nucleus | 25.7 | 12.37 |
| CDY22356 | Canola | nucleus | 27.93 | 9.63 |
| CDY47812 | Canola | nucleus | 27.37 | 9.5 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078E912 | EnsemblPlants:CDX98540 | ProteinID:CDX98540 | ProteinID:CDX98540.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00106189001 | InterPro:IPR004333 | InterPro:IPR036893 | PFAM:PF03110 |
| PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF64 | InterPro:SBP_dom | InterPro:SBP_sf | SUPFAM:SSF103612 |
| UniParc:UPI0004EC07A9 | SEG:seg | : | : | : | : |
Description
BnaC05g38350D
Coordinates
chrLK031905:-:876228..877045
Molecular Weight (calculated)
20769.5 Da
IEP (calculated)
9.956
GRAVY (calculated)
-1.194
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGQRSQRWG YLKDKAIATS LAEEEMENSM DGEEDDTGDE DKRKRVMERA RGPNTERVPL RLCLVDRCTA NLTEAKQYYR RHKVCEVHAK ASSATVAGVK
101: QRFCQQCSRF HELAEFDETK RSCRRRLAGH NERRRKISGD SYGEGSGRRG VSLTQTQERN RIDMKLPMTN SPFKRPQIR
101: QRFCQQCSRF HELAEFDETK RSCRRRLAGH NERRRKISGD SYGEGSGRRG VSLTQTQERN RIDMKLPMTN SPFKRPQIR
001: MEGQRTQRRG YLKDKATVSN LVEEEMENGM DGEEEDGGDE DKRKKVMERV RGPSTDRVPS RLCQVDRCTV NLTEAKQYYR RHRVCEVHAK ASAATVAGVR
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
101: QRFCQQCSRF HELPEFDEAK RSCRRRLAGH NERRRKISGD SFGEGSGRRG FSGQLIQTQE RNRVDRKLPM TNSSFKRPQI R
Arabidopsis Description
SPL5SPL5 [Source:UniProtKB/TrEMBL;Acc:A0A178VL13]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.