Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67700 | Canola | nucleus | 90.41 | 95.38 |
| Bra010949.1-P | Field mustard | nucleus | 95.62 | 95.36 |
| CDX84927 | Canola | nucleus | 72.6 | 72.21 |
| CDY03914 | Canola | nucleus | 72.6 | 71.24 |
| CDY15712 | Canola | nucleus | 72.33 | 70.59 |
| CDY27612 | Canola | nucleus | 63.56 | 70.52 |
| CDY27611 | Canola | nucleus | 64.38 | 64.38 |
| CDY03913 | Canola | nucleus | 65.21 | 64.15 |
| CDY15713 | Canola | nucleus | 68.49 | 64.1 |
| AT1G27360.1 | Thale cress | nucleus | 68.22 | 63.36 |
| CDX84928 | Canola | nucleus | 62.47 | 62.64 |
| Os02t0139400-01 | Rice | nucleus | 27.95 | 36.17 |
| CDY17204 | Canola | nucleus | 13.97 | 35.92 |
| CDY27935 | Canola | nucleus | 14.25 | 35.37 |
| CDY57212 | Canola | nucleus | 12.88 | 33.33 |
| CDY37684 | Canola | nucleus | 12.88 | 33.33 |
| KRG97402 | Soybean | nucleus | 37.26 | 31.41 |
| CDY32959 | Canola | nucleus | 33.42 | 31.28 |
| CDY50515 | Canola | nucleus | 13.42 | 31.21 |
| CDY24113 | Canola | nucleus | 13.7 | 31.06 |
| CDY43604 | Canola | nucleus | 32.6 | 30.91 |
| KRH31506 | Soybean | nucleus | 36.99 | 30.47 |
| Os02t0174100-02 | Rice | nucleus | 20.55 | 29.88 |
| CDX97645 | Canola | nucleus | 14.25 | 29.05 |
| CDY20128 | Canola | nucleus | 13.97 | 28.98 |
| CDY32310 | Canola | nucleus | 13.97 | 28.98 |
| CDX98540 | Canola | nucleus | 13.97 | 28.49 |
| GSMUA_Achr9P14160_001 | Banana | nucleus | 35.62 | 28.38 |
| CDY61210 | Canola | nucleus | 13.7 | 27.93 |
| GSMUA_Achr4P05720_001 | Banana | nucleus | 26.3 | 27.75 |
| GSMUA_Achr4P12470_001 | Banana | nucleus | 26.58 | 27.71 |
| GSMUA_Achr9P23140_001 | Banana | nucleus | 31.23 | 27.4 |
| VIT_11s0065g00170.t01 | Wine grape | nucleus | 34.52 | 27.1 |
| GSMUA_Achr6P36010_001 | Banana | nucleus | 32.05 | 26.71 |
| CDY25876 | Canola | nucleus | 12.88 | 26.7 |
| GSMUA_Achr5P22630_001 | Banana | nucleus | 32.88 | 26.43 |
| GSMUA_Achr3P05360_001 | Banana | nucleus | 33.42 | 26.29 |
| HORVU6Hr1G031450.6 | Barley | nucleus | 23.29 | 26.07 |
| CDY47812 | Canola | nucleus | 36.71 | 25.97 |
| CDX79544 | Canola | nucleus | 13.15 | 25.67 |
| TraesCS6A01G155300.1 | Wheat | nucleus | 23.01 | 25.61 |
| GSMUA_Achr3P27750_001 | Banana | nucleus | 32.88 | 25.59 |
| TraesCS6D01G145200.1 | Wheat | nucleus | 22.74 | 25.54 |
| GSMUA_Achr5P21990_001 | Banana | nucleus | 30.14 | 25.4 |
| TraesCS6B01G183400.1 | Wheat | nucleus | 22.74 | 25.38 |
| OQU77017 | Sorghum | nucleus | 30.41 | 25.23 |
| Zm00001d053775_P001 | Maize | nucleus | 22.74 | 25.08 |
| CDY22356 | Canola | nucleus | 35.62 | 25.05 |
| Zm00001d015410_P002 | Maize | nucleus | 22.74 | 25.0 |
| Os06t0703500-02 | Rice | nucleus | 32.05 | 24.63 |
| EES04609 | Sorghum | nucleus | 22.74 | 24.63 |
| Zm00001d014698_P001 | Maize | nucleus | 29.59 | 24.6 |
| TraesCS6D01G098500.1 | Wheat | nucleus | 31.78 | 24.52 |
| TraesCS6B01G138400.1 | Wheat | nucleus | 31.78 | 24.52 |
| GSMUA_Achr10P... | Banana | nucleus | 33.7 | 24.4 |
| GSMUA_Achr10P... | Banana | nucleus | 32.05 | 24.02 |
| TraesCS6A01G110100.2 | Wheat | nucleus | 31.23 | 24.0 |
| EES04495 | Sorghum | nucleus | 31.51 | 23.96 |
| HORVU6Hr1G019700.3 | Barley | nucleus | 32.05 | 23.08 |
| Os06t0663500-00 | Rice | nucleus | 21.64 | 23.03 |
| CDX90071 | Canola | nucleus | 19.45 | 22.76 |
| CDY61750 | Canola | nucleus | 19.18 | 22.73 |
| CDX95958 | Canola | nucleus | 18.08 | 22.07 |
| CDY15132 | Canola | nucleus | 13.97 | 21.89 |
| CDX98259 | Canola | nucleus | 19.45 | 21.85 |
| Zm00001d015233_P001 | Maize | mitochondrion, nucleus, plastid | 31.51 | 21.66 |
| GSMUA_Achr8P23820_001 | Banana | nucleus | 31.23 | 21.63 |
| CDX81606 | Canola | nucleus | 19.73 | 21.62 |
| CDY47656 | Canola | nucleus | 19.18 | 21.6 |
| Zm00001d053890_P003 | Maize | nucleus | 28.49 | 21.58 |
| CDY06881 | Canola | nucleus | 21.37 | 21.49 |
| CDX79888 | Canola | nucleus | 21.64 | 21.47 |
| CDY50300 | Canola | nucleus | 19.18 | 21.34 |
| CDX96251 | Canola | nucleus | 19.18 | 21.34 |
| CDY69014 | Canola | nucleus | 18.63 | 21.32 |
| CDY14818 | Canola | nucleus | 21.37 | 21.25 |
| CDY45826 | Canola | nucleus | 19.73 | 21.11 |
| CDX67715 | Canola | nucleus | 18.08 | 20.89 |
| CDX84872 | Canola | nucleus | 19.45 | 20.82 |
| CDY53504 | Canola | nucleus | 21.1 | 20.81 |
| CDY34028 | Canola | nucleus | 19.45 | 20.4 |
| CDX71667 | Canola | nucleus | 20.0 | 20.33 |
| CDY38043 | Canola | nucleus | 18.63 | 20.3 |
| CDX80286 | Canola | cytosol, nucleus, plasma membrane | 1.1 | 6.9 |
Protein Annotations
| MapMan:15.5.18 | Gene3D:4.10.1100.10 | GO:A0A078FEW0 | UniProt:A0A078FEW0 | EnsemblPlants:CDY11816 | ProteinID:CDY11816 |
| ProteinID:CDY11816.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00050076001 | InterPro:IPR004333 |
| InterPro:IPR036893 | PFAM:PF03110 | PFscan:PS51141 | PANTHER:PTHR31251 | PANTHER:PTHR31251:SF62 | InterPro:SBP_dom |
| InterPro:SBP_sf | SUPFAM:SSF103612 | UniParc:UPI0004EDD709 | SEG:seg | : | : |
Description
BnaC03g57620DBnaC03g57620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEW0]
Coordinates
chrLK032014:+:808467..811032
Molecular Weight (calculated)
41001.4 Da
IEP (calculated)
6.735
GRAVY (calculated)
-0.844
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCNMASPTW DWDHLIMFNP SETENDKNQQ PSPEWEIEKG EGIESMFPCF DGLEKVSSGT PSGFWHSQST STNSSSPKVK QTNLASESSP GDSCSNVDSV
101: YVKASTSAES DLCLELGKQT YSEEFWCRDN NDLSAVSMNA RKKQSVQVPR CQIDGCELDL SSAKDYHRKH RVCVNHSKCP KVTVGGLERR FCQQCSRLHA
201: VSEFDEKKRS CRKRLTHHNA RRRKLPGIFP LNPERVCNPR HHTNMLWDEM SLNTKSEETL AWDTTYDTKP TQIESGFTLS FQRGHGRPDE QVVAGSSRSF
301: SPYQTSSGFQ LPSKGVGEYS GGLNESQDFY SALSLLSTSS DSRGTKHNPM VESQPIHGTF PTHFM
101: YVKASTSAES DLCLELGKQT YSEEFWCRDN NDLSAVSMNA RKKQSVQVPR CQIDGCELDL SSAKDYHRKH RVCVNHSKCP KVTVGGLERR FCQQCSRLHA
201: VSEFDEKKRS CRKRLTHHNA RRRKLPGIFP LNPERVCNPR HHTNMLWDEM SLNTKSEETL AWDTTYDTKP TQIESGFTLS FQRGHGRPDE QVVAGSSRSF
301: SPYQTSSGFQ LPSKGVGEYS GGLNESQDFY SALSLLSTSS DSRGTKHNPM VESQPIHGTF PTHFM
001: MDCNMVSSFP WDWENLIMSN QSKTENEKKQ QSTEWEFEKG EGIESIVPDF LGFEKVSSGS ATSFWHTAVS KSSQSTSINS SSPEDKRCNL ASQSSPGDSS
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
101: SNIDFLQVKP STALEVPIAS AESDLCLKLG KRTYSEEFWG RNNNDLSAVS MNLLTPSVVA RKKTKSCGQS MQVPRCQIDG CELDLSSSKD YHRKHRVCET
201: HSKCPKVVVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL SHHNARRRKP QGVFPLNSER VFDRRQHTSM LWNGLSLNTR SEEKYTWGTT YETKPTQMES
301: GFTLSFQRGN GSEDQLFTGS TLSFSAFQTS GGFSAGKSNI QLPDKGVGEC SGGLHESHDF YSALSLLSTT SDSQGIKHTP VAEPPPIFGT FPSHFI
Arabidopsis Description
SPL10Squamosa promoter-binding-like protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.