CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67913
CDX79294
CDX80665
CDX82568
CDX87407
CDX88507
CDX89165
CDX93945
CDX94520
CDY01615
CDY07541
CDY09318
CDY13070
CDY16687
CDY18062
CDY21311
CDY23552
CDY24237
CDY26402
CDY27795
CDY41936
CDY43390
CDY46345
CDY51918
CDY63333
CDY64561
CDY67478
CDY70667
CDY71192
CDY71607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66350.1	CDX79294	AT1G79110.1	23482857
AT1G66350.1	CDX87407	AT1G79110.1	23482857
AT1G66350.1	CDX88507	AT1G79110.1	23482857
AT1G66350.1	CDY27795	AT3G05120.1	16709201
AT1G66350.1	CDY41936	AT3G05120.1	16709201
AT1G66350.1	CDY27795	AT3G05120.1	19500306
AT1G66350.1	CDY41936	AT3G05120.1	19500306
AT1G66350.1	CDX82568	AT3G12920.1	23482857
AT1G66350.1	CDY23552	AT3G12920.1	23482857
AT1G66350.1	CDY24237	AT3G12920.1	23482857
AT1G66350.1	CDY43390	AT3G12920.1	23482857
AT1G66350.1	CDY64561	AT3G12920.1	23482857
AT1G66350.1	CDX67913	AT3G63010.1	16709201
AT1G66350.1	CDX89165	AT3G63010.1	16709201
AT1G66350.1	CDX93945	AT3G63010.1	16709201
AT1G66350.1	CDY63333	AT3G63010.1	16709201
AT1G66350.1	CDY67478	AT3G63010.1	16709201
AT1G66350.1	CDY70667	AT3G63010.1	16709201
AT1G66350.1	CDX67913	AT3G63010.1	19500306
AT1G66350.1	CDX89165	AT3G63010.1	19500306
AT1G66350.1	CDX93945	AT3G63010.1	19500306
AT1G66350.1	CDY63333	AT3G63010.1	19500306
AT1G66350.1	CDY67478	AT3G63010.1	19500306
AT1G66350.1	CDY70667	AT3G63010.1	19500306
AT1G66350.1	CDX94520	AT4G19700.1	23482857
AT1G66350.1	CDY01615	AT4G19700.1	23482857
AT1G66350.1	CDY07541	AT4G19700.1	23482857
AT1G66350.1	CDY09318	AT4G19700.1	23482857
AT1G66350.1	CDY21311	AT4G19700.1	23482857
AT1G66350.1	CDY51918	AT4G19700.1	23482857
AT1G66350.1	CDY71607	AT4G19700.1	23482857
AT1G66350.1	CDX80665	AT5G27320.1	16709201
AT1G66350.1	CDY16687	AT5G27320.1	16709201
AT1G66350.1	CDX80665	AT5G27320.1	19500306
AT1G66350.1	CDY16687	AT5G27320.1	19500306
AT1G66350.1	CDY13070	AT5G45100.1	23482857
AT1G66350.1	CDY18062	AT5G45100.1	23482857
AT1G66350.1	CDY26402	AT5G45100.1	23482857
AT1G66350.1	CDY46345	AT5G45100.1	23482857
AT1G66350.1	CDY71192	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039762.1-P	Field mustard	cytosol	96.06	99.8
CDY55037	Canola	cytosol	98.22	98.22
AT1G66350.1	Thale cress	cytosol	85.8	85.13
CDY50706	Canola	cytosol, extracellular, plastid	7.69	63.93
CDY43123	Canola	cytosol, extracellular, plastid	7.69	63.93
CDY38434	Canola	cytosol	61.54	61.18
CDY16915	Canola	cytosol, nucleus, plastid	63.12	60.95
KRG97933	Soybean	nucleus	67.06	58.22
KRH30942	Soybean	cytosol	67.26	57.31
CDY36236	Canola	cytosol, nucleus, plastid	61.93	56.47
Solyc11g011260.1.1	Tomato	nucleus	63.91	55.1
PGSC0003DMT400040589	Potato	nucleus	63.91	55.1
CDY04092	Canola	cytosol	57.2	54.31
CDY17662	Canola	cytosol, nucleus, plastid	61.14	54.2
CDY64837	Canola	cytosol	57.2	53.51
CDY43122	Canola	nucleus	43.0	52.28
CDY50707	Canola	cytosol, nucleus, plastid	42.8	52.16
CDY45059	Canola	cytosol	22.88	38.16
CDY68881	Canola	cytosol	16.96	35.25
CDY03601	Canola	cytosol	29.59	33.41
CDY22795	Canola	cytosol, plastid	28.6	32.66
CDY64484	Canola	mitochondrion	15.58	32.11
CDY50028	Canola	nucleus, plastid	25.05	30.46
CDY54362	Canola	plastid	25.05	30.17
CDY27670	Canola	cytosol	22.68	28.47
CDX78219	Canola	nucleus, plastid	28.99	24.38
CDX73496	Canola	nucleus, plastid	29.19	23.79
CDY49199	Canola	plastid	29.19	23.42
CDY47352	Canola	plastid	28.6	22.76
CDY53846	Canola	cytosol	25.44	22.13
CDY72338	Canola	cytosol	25.44	22.05
CDY70213	Canola	plastid	27.61	21.77
CDY45974	Canola	plastid	27.61	21.71
CDY37137	Canola	plastid	28.6	15.2

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	GO:A0A078JY94	UniProt:A0A078JY94
EnsemblPlants:CDY70426	ProteinID:CDY70426	ProteinID:CDY70426.1	InterPro:DELLA_N_sf	GO:GO:0000989	GO:GO:0003674
GO:GO:0003712	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00003199001	InterPro:IPR005202	InterPro:IPR038088	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS
UniParc:UPI0004EE4155	SEG:seg	:	:	:	:

Description

BnaCnng68300DBnaCnng68300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JY94]

Coordinates

chrLK042057:-:825..2545

Molecular Weight (calculated)

55972.4 Da

IEP (calculated)

5.224

GRAVY (calculated)

-0.173

Length

507 amino acids

Sequence
(BLAST)

001: MKREHGHRET SSVKAGSSSM TANKEEAGGF DELLVVLGYK VRSSDMADVA HKLEQLEMVL DDGNSHLSDD TVHYNPSDLS GWVDSLLFDL NPTCDQVIPD
101: QDSEYELSAI PGSAAYPRGK RTRTGSDSST TRSMVVLDSQ ETGVRLVHAL LACAEAVQQN NLKLADVLVK HVGLLASSQA GAMRKVATYF AEGLARRIYR
201: IYPRDDVGLS SFSDTLQIHF YECCPYLKFA HFTANQAILE AFATAEKVHV IDLGINQGLQ WPALIQALAL RPGGPPDFRL TGIGSSLTGQ SIQEVGWKLG
301: QLANAVGVNF EFKSIVLNSL SDLKQEMLEI RTGSESIAVN SVFELHRLLA HPGSIDNILL TIKSIKPDII TVVEQEADHN GAVFFDRFTE SLHYYSSLFD
401: SLEGPPSQDR VMSELYLGRQ ILNLVACEGE DRVERHETLA QWRNRFTMGG FKSVNIGSYA YKQASMLLAL YAGADGYKVE ENEGCLLLGW QTRPLIATSA
501: WRFNRVE

Best Arabidopsis Sequence Match ( AT1G66350.1 )
(BLAST)

001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E

Arabidopsis Description

RGL1DELLA protein RGL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.