CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72645
CDX73678
CDX95314
CDY23174
CDY44032
CDY50264

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	CDX73678	AT3G51920.1	17360592
AT5G41920.1	CDX95314	AT3G51920.1	17360592
AT5G41920.1	CDY23174	AT3G51920.1	17360592
AT5G41920.1	CDX72645	AT4G37650.1	18500650
AT5G41920.1	CDY44032	AT4G37650.1	18500650
AT5G41920.1	CDY50264	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27670	Canola	cytosol	95.53	58.17
AT5G41920.1	Thale cress	cytosol	87.4	53.09
CDY50706	Canola	cytosol, extracellular, plastid	10.16	40.98
CDY43123	Canola	cytosol, extracellular, plastid	10.16	40.98
VIT_03s0017g01660.t01	Wine grape	plastid	71.54	39.82
PGSC0003DMT400030652	Potato	cytosol	66.26	39.66
KRH29089	Soybean	mitochondrion	71.14	39.59
KRH24117	Soybean	plastid	69.11	38.2
Solyc07g043330.1.1	Tomato	plastid	66.26	37.73
Zm00001d021826_P001	Maize	cytosol	68.7	37.39
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	46.34	37.01
KXG36498	Sorghum	cytosol, plastid	69.11	36.96
Os07t0567700-02	Rice	cytosol	67.89	36.54
TraesCS2A01G200700.1	Wheat	cytosol	65.45	35.78
TraesCS2B01G228000.1	Wheat	cytosol	65.04	35.63
TraesCS2D01G208500.1	Wheat	cytosol	65.04	35.63
HORVU0Hr1G003230.2	Barley	mitochondrion	59.35	31.53
CDX78219	Canola	nucleus, plastid	59.35	24.21
CDY68881	Canola	cytosol	23.98	24.18
CDY45059	Canola	cytosol	29.27	23.68
CDX73496	Canola	nucleus, plastid	59.35	23.47
CDY50028	Canola	nucleus, plastid	36.59	21.58
CDY54362	Canola	plastid	36.18	21.14
CDY38434	Canola	cytosol	35.37	17.06
CDY16915	Canola	cytosol, nucleus, plastid	34.96	16.38
CDY03601	Canola	cytosol	29.67	16.26
CDY36236	Canola	cytosol, nucleus, plastid	36.18	16.01
CDY55037	Canola	cytosol	32.93	15.98
CDY22795	Canola	cytosol, plastid	28.46	15.77
CDY70426	Canola	cytosol	32.11	15.58
CDY17662	Canola	cytosol, nucleus, plastid	36.18	15.56
CDY72338	Canola	cytosol	34.15	14.36
CDY53846	Canola	cytosol	33.74	14.24
CDY04092	Canola	cytosol	30.08	13.86
CDY70213	Canola	plastid	36.18	13.84
CDY49199	Canola	plastid	35.37	13.77
CDY47352	Canola	plastid	35.37	13.66
CDY45974	Canola	plastid	35.77	13.64
CDY64837	Canola	cytosol	29.67	13.47
CDY37137	Canola	plastid	28.46	7.34
CDY50707	Canola	cytosol, nucleus, plastid	12.2	7.21
CDY43122	Canola	nucleus	12.2	7.19

Protein Annotations

EnsemblPlants:CDY64484	EnsemblPlantsGene:GSBRNA2T00041276001	GO:A0A078JFN2	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF35	PFAM:PF03514	PFscan:PS50985	ProteinID:CDY64484	ProteinID:CDY64484.1
UniParc:UPI0004EE64C2	UniProt:A0A078JFN2	MapMan:15.5.12	:	:	:

Description

BnaCnng43970DBnaCnng43970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFN2]

Coordinates

chrLK034474:+:11217..11957

Molecular Weight (calculated)

27234.8 Da

IEP (calculated)

9.479

GRAVY (calculated)

-0.157

Length

246 amino acids

Sequence
(BLAST)

001: MQGLQWPGLF HILASRPRKL RSIRITGFGP SSDVLASTGR RLADFAASLS LPFEFRPIVG KIGNVTDPSR LGRRPGEAVV VHWMQHRLYD VTGNGIDALE
101: IVRRLRPNLI TMVEQELSYD DGGGGCFLGR FVEALHYYSA LFDALGDGLG EESGERFTVE QIVLATEIRN IVGGKRRGVM RWKEELSRVG FRPVSLRGNP
201: ATQAGLLLGM LPWNGYTLVE ENGTLRLGWK DLSLLTASAW QSQPSD

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.