CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50028	Canola	nucleus, plastid	97.15	98.08
Bra038002.1-P	Field mustard	nucleus, plastid	98.81	93.91
AT1G55580.1	Thale cress	plastid	88.12	83.37
VIT_19s0015g01930.t01	Wine grape	cytosol	53.92	54.96
Solyc07g066250.1.1	Tomato	nucleus	51.78	50.93
PGSC0003DMT400057265	Potato	nucleus, plastid	51.54	50.35
GSMUA_Achr1P19470_001	Banana	nucleus	43.94	48.3
GSMUA_AchrUn_...	Banana	cytosol	43.71	48.17
GSMUA_Achr1P09360_001	Banana	cytosol	41.81	47.7
GSMUA_Achr7P16880_001	Banana	cytosol	41.33	45.91
CDY43123	Canola	cytosol, extracellular, plastid	5.94	40.98
CDY50706	Canola	cytosol, extracellular, plastid	5.94	40.98
TraesCS6A01G159500.1	Wheat	cytosol	38.0	40.82
TraesCS6D01G153000.1	Wheat	cytosol	37.77	40.25
TraesCS6B01G191800.1	Wheat	cytosol	37.77	40.25
TraesCS7A01G382800.1	Wheat	cytosol	40.38	39.91
TraesCS7D01G379200.1	Wheat	cytosol	40.14	39.76
HORVU7Hr1G091000.1	Barley	cytosol	40.14	39.67
TraesCS7B01G285500.1	Wheat	cytosol	40.38	39.63
KXG29713	Sorghum	cytosol	37.29	39.55
Os06t0610350-01	Rice	cytosol	39.19	37.41
Zm00001d046783_P001	Maize	mitochondrion	39.91	36.84
CDY64484	Canola	mitochondrion	21.14	36.18
Zm00001d015815_P001	Maize	cytosol	35.63	36.06
OQU76691	Sorghum	cytosol, extracellular	39.91	35.9
HORVU6Hr1G033280.1	Barley	cytosol	38.0	35.87
Os02t0197300-00	Rice	cytosol	37.53	35.43
CDY45059	Canola	cytosol	23.52	32.57
CDY27670	Canola	cytosol	30.64	31.93
CDY68881	Canola	cytosol	18.29	31.56
CDY22795	Canola	cytosol, plastid	30.17	28.6
CDY03601	Canola	cytosol	29.93	28.06
CDY55037	Canola	cytosol	30.17	25.05
CDY70426	Canola	cytosol	30.17	25.05
CDY38434	Canola	cytosol	28.74	23.73
CDY16915	Canola	cytosol, nucleus, plastid	28.98	23.24
CDX78219	Canola	nucleus, plastid	32.07	22.39
CDY36236	Canola	cytosol, nucleus, plastid	29.22	22.12
CDX73496	Canola	nucleus, plastid	32.07	21.7
CDY17662	Canola	cytosol, nucleus, plastid	28.74	21.15
CDY53846	Canola	cytosol	29.22	21.1
CDY72338	Canola	cytosol	29.22	21.03
CDY70213	Canola	plastid	31.35	20.53
CDY45974	Canola	plastid	30.88	20.16
CDY49199	Canola	plastid	29.69	19.78
CDY04092	Canola	cytosol	24.94	19.66
CDY47352	Canola	plastid	29.69	19.62
CDY64837	Canola	cytosol	25.18	19.56
CDY43122	Canola	nucleus	15.2	15.35
CDY50707	Canola	cytosol, nucleus, plastid	14.96	15.14
CDY37137	Canola	plastid	29.45	13.0

Protein Annotations

MapMan:15.5.12	GO:A0A078IWJ7	UniProt:A0A078IWJ7	EnsemblPlants:CDY54362	ProteinID:CDY54362	ProteinID:CDY54362.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0010223	EnsemblPlantsGene:GSBRNA2T00013941001	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF2	InterPro:Scarecrow-like_18/MOC1	InterPro:TF_GRAS	UniParc:UPI0004EF1997	SEG:seg

Description

BnaC06g07300DBnaC06g07300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWJ7]

Coordinates

chrLK033309:-:44835..46157

Molecular Weight (calculated)

46734.5 Da

IEP (calculated)

6.753

GRAVY (calculated)

-0.101

Length

421 amino acids

Sequence
(BLAST)

001: MLASFKSSSS SSEDATENPP PPPPLCLASS SAATSAAHHL RRLLFTAADF ISQSNVSAAQ NILSILTSNS SPYGDSTERL VHLFTKALSV RIGLSENAAT
101: WTTNEMTSST VFTSSSCYYL WLNQLTPFIR FSHLTANQAI LDATETNNGN GALHILDLDI SQGLQWPPLM QALAERSSSN PSSTPPPSLR ITGCGRDVTV
201: LNRTGDRLTR FANSLGLQFQ FHTLVIAEED LAGLLLQIRL LALSAVQGES IAVNCVHFLH RFFNDAGDMI GHFLSAIKSL NPRIVTMAER EANHGDPSFV
301: NRFSEALDHF MAIFDSLEAT LPPNSRERLT LEQRWFGMEI LDVVAAEAAE RKQRHRRFEV WEEMMKRHGF ANVPIGSFAF SQAKLLLRLH YPSEGYNLQF
401: LNDSLFLGWK NRLLFSVSSW K

Best Arabidopsis Sequence Match ( AT1G55580.1 )
(BLAST)

001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK

Arabidopsis Description

SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.