CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046783_P001	Maize	mitochondrion	85.68	87.94
TraesCS7D01G379200.1	Wheat	cytosol	72.65	80.0
TraesCS7A01G382800.1	Wheat	cytosol	72.65	79.81
HORVU7Hr1G091000.1	Barley	cytosol	72.22	79.34
TraesCS7B01G285500.1	Wheat	cytosol	72.22	78.79
Os06t0610350-01	Rice	cytosol	72.65	77.1
KXG29713	Sorghum	cytosol	56.62	66.75
GSMUA_Achr1P19470_001	Banana	nucleus	40.6	49.61
GSMUA_AchrUn_...	Banana	cytosol	40.38	49.48
GSMUA_Achr1P09360_001	Banana	cytosol	38.89	49.32
GSMUA_Achr7P16880_001	Banana	cytosol	39.1	48.28
VIT_19s0015g01930.t01	Wine grape	cytosol	40.6	46.0
Solyc07g066250.1.1	Tomato	nucleus	38.25	41.82
PGSC0003DMT400057265	Potato	nucleus, plastid	38.46	41.76
CDY50028	Canola	nucleus, plastid	35.68	40.05
CDY54362	Canola	plastid	35.9	39.91
AT1G55580.1	Thale cress	plastid	36.54	38.43
Bra038002.1-P	Field mustard	nucleus, plastid	35.9	37.92
OQU83473	Sorghum	cytosol	26.5	29.38
OQU87235	Sorghum	extracellular	18.38	29.15
EES02045	Sorghum	cytosol, plastid	26.92	27.45
KXG36498	Sorghum	cytosol, plastid	25.85	26.3
OQU81603	Sorghum	cytosol	18.8	24.58
KXG22896	Sorghum	cytosol, plasma membrane	26.92	23.91
EES18409	Sorghum	cytosol	25.0	23.73
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	27.78	23.26
EES09233	Sorghum	cytosol	22.65	21.77
EES16518	Sorghum	cytosol	19.66	20.44
OQU77885	Sorghum	cytosol	20.73	20.12
KXG23987	Sorghum	cytosol	22.44	20.0
OQU77884	Sorghum	plasma membrane	19.02	19.56
EER93592	Sorghum	cytosol	25.85	19.3
KXG22822	Sorghum	mitochondrion	22.65	18.37
EES01920	Sorghum	cytosol	20.73	18.06
EER87757	Sorghum	mitochondrion	23.93	17.58
OQU82754	Sorghum	plastid	26.71	17.58

Protein Annotations

MapMan:15.5.12	UniProt:A0A1W0VTV7	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010014	GO:GO:0010223	InterPro:IPR005202
EnsemblPlants:OQU76691	ProteinID:OQU76691	ProteinID:OQU76691.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF2	EnsemblPlantsGene:SORBI_3010G189500	InterPro:Scarecrow-like_18/MOC1	InterPro:TF_GRAS	UniParc:UPI0009DC8FE4	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:53013373..53022128

Molecular Weight (calculated)

49665.2 Da

IEP (calculated)

7.523

GRAVY (calculated)

0.086

Length

468 amino acids

Sequence
(BLAST)

001: MSLLVGNDGV QVEVMIVCLI WGLRHSIQED FKKLGLGGTT TVVQAMLSSL HHHHSSSSSD TDTNNGNNKN GSSGVLAAAV PSARDLVLAC ADLLQRGDLQ
101: AARRAAGVLL SAASPRADAA DRLAYHFARA LALRADVRAA AVAAGRVVAP GLVASAATSS AYLAFNQIAP FLRFAHLTAN QAILDAVEGA RRIHILDLDA
201: AHGVQWPPLL QAIAERADPA AGPPEVRITG AGADRDTLLR TGSRLRAFAR SIQLPFHFTP LLLSCAATHH HQHVASGSTT TTTNSSAASS LELHPDETLA
301: VNCVMFLHKL GGQDELAAFL KWVKAMAPAV VTVAERETIG GGFDRIDDLP QRAAVAMDHY SAVFEALEAT VPPGSRERLA VEQEVLGREI DAALDASGGR
401: WWRGLERWGA AARAAGFAAR PLSAFAVSQA RLLLRLHYPS EGYLVQEARG ACFLGWQTRP LLSVSSWQ

Best Arabidopsis Sequence Match ( AT1G55580.1 )
(BLAST)

001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK

Arabidopsis Description

SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.