CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038518_P001	Maize	cytosol	88.64	87.93
TraesCS1B01G314500.1	Wheat	peroxisome	69.78	74.62
HORVU1Hr1G069140.1	Barley	cytosol	69.78	73.66
TraesCS1A01G304000.1	Wheat	peroxisome	70.99	71.28
TraesCS1D01G303500.1	Wheat	peroxisome	69.98	70.7
Os05t0485400-00	Rice	peroxisome	71.6	70.6
VIT_07s0005g03700.t01	Wine grape	cytosol	40.37	40.86
PGSC0003DMT400087504	Potato	nucleus	39.96	40.53
Solyc09g066450.1.1	Tomato	cytosol	39.35	38.8
KRH19587	Soybean	cytosol	38.54	36.12
KRH32212	Soybean	cytosol	37.73	34.64
OQU83473	Sorghum	cytosol	29.41	34.36
KXG36498	Sorghum	cytosol, plastid	31.03	33.26
KXG22896	Sorghum	cytosol, plasma membrane	34.69	32.45
OQU87235	Sorghum	extracellular	17.85	29.83
KXG29713	Sorghum	cytosol	22.31	27.71
EES02045	Sorghum	cytosol, plastid	24.95	26.8
OQU76691	Sorghum	cytosol, extracellular	23.73	25.0
OQU82754	Sorghum	plastid	35.29	24.47
EES01920	Sorghum	cytosol	25.36	23.28
OQU81603	Sorghum	cytosol	16.63	22.91
KXG23987	Sorghum	cytosol	24.14	22.67
EES16518	Sorghum	cytosol	20.49	22.44
EES09233	Sorghum	cytosol	21.5	21.77
OQU77884	Sorghum	plasma membrane	19.68	21.32
KXG22822	Sorghum	mitochondrion	24.75	21.14
OQU77885	Sorghum	cytosol	20.49	20.95
EER93592	Sorghum	cytosol	25.76	20.26
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	22.92	20.21
EER87757	Sorghum	mitochondrion	23.94	18.52

Protein Annotations

MapMan:15.5.12	EntrezGene:8077020	UniProt:C5YZV9	EnsemblPlants:EES18409	ProteinID:EES18409	ProteinID:EES18409.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF22	EnsemblPlantsGene:SORBI_3009G177100	InterPro:TF_GRAS
UniParc:UPI0001A889EB	RefSeq:XP_002439979.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:53211624..53213105

Molecular Weight (calculated)

51859.6 Da

IEP (calculated)

6.429

GRAVY (calculated)

0.032

Length

493 amino acids

Sequence
(BLAST)

001: MQDSLSLMQF HDPYLYSGSA GSANLPLSHP FSPHHHQGFV DNCTGKDVAE FVDPATTTAA EVSSDEQELA VSKEVSEGGG GGAVVVEVEE RNDATTARGG
101: ELEAHGVRMI ALLMESAVAV SVGNLADANS MLLELAQMAS PYASSCGERL VAYFTKALAA RLMSSWVGIC APLAPPCAAV HAAFRAFYNV SPFARFAYLA
201: CNQAILEAFH GKRLVHIVDL DVVPGGALQW LSLLPALAAR PGGPPVLRVT GFGMSRSALH DTGNQLAGLA SKLNMPFEFY AIAKRPGDVV VGAAVADMPS
301: RRPGEALAVH WLRHALYDAA GDDGATMQLV QWLEPKVLTL VEQERAGAAP GDVGGGGGDH GHFLDRFVSA LHHYSALFDS LGASRPSELD ASRHLVEQGV
401: LGREIGNVLA VGGPSRSGRG KFGCWQEELA RHGFLRAGGV GRAQLVAGAC PAGLGYTVAD DHHGTVRLGW KGTPLYAVST WAWCPSPHGQ AHR

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.