CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03388
KXG22553

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	EES03388	AT4G22220.1	21798944
AT1G50420.1	KXG22553	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G026010.3	Barley	cytosol	59.78	60.31
TraesCS4A01G185900.1	Wheat	cytosol	59.11	59.64
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	19.11	58.9
TraesCS4D01G127800.2	Wheat	mitochondrion	57.78	54.74
Zm00001d023247_P001	Maize	plastid	59.56	47.86
CDY45059	Canola	cytosol	28.89	42.76
CDY68881	Canola	cytosol	22.67	41.8
EES09233	Sorghum	cytosol	42.89	39.63
GSMUA_Achr8P09690_001	Banana	cytosol	36.22	36.55
KRH29080	Soybean	cytosol	35.78	35.38
KRH24106	Soybean	cytosol, nucleus, peroxisome	35.56	35.16
EES02045	Sorghum	cytosol, plastid	35.78	35.08
Bra018848.1-P	Field mustard	cytosol	34.22	35.0
Bra014251.1-P	Field mustard	cytosol	34.44	34.83
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	36.44	34.67
CDY22795	Canola	cytosol, plastid	34.0	34.46
CDY03601	Canola	cytosol	34.0	34.08
AT1G50420.1	Thale cress	cytosol	36.22	33.82
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	34.67	33.55
Solyc12g099900.1.1	Tomato	nucleus	34.89	33.55
KRH29971	Soybean	cytosol	32.89	33.48
VIT_13s0019g01220.t01	Wine grape	cytosol	35.56	33.47
PGSC0003DMT400011839	Potato	cytosol	34.67	33.33
VIT_06s0009g02390.t01	Wine grape	cytosol	35.11	33.33
KRH62871	Soybean	cytosol	32.67	33.18
KXG22822	Sorghum	mitochondrion	41.56	32.41
Solyc01g008910.2.1	Tomato	cytosol	34.0	32.14
PGSC0003DMT400058477	Potato	cytosol	33.33	31.78
KRH27822	Soybean	nucleus, plastid	33.33	31.71
OQU83473	Sorghum	cytosol	27.78	29.62
OQU87235	Sorghum	extracellular	19.11	29.15
OQU77884	Sorghum	plasma membrane	29.33	29.01
OQU77885	Sorghum	cytosol	26.89	25.1
KXG29713	Sorghum	cytosol	20.0	22.67
KXG36498	Sorghum	cytosol, plastid	23.11	22.61
KXG22896	Sorghum	cytosol, plasma membrane	26.44	22.58
EES01920	Sorghum	cytosol	26.89	22.53
KXG23987	Sorghum	cytosol	25.11	21.52
EES18409	Sorghum	cytosol	22.44	20.49
OQU76691	Sorghum	cytosol, extracellular	20.44	19.66
OQU81603	Sorghum	cytosol	15.11	18.99
EER93592	Sorghum	cytosol	26.44	18.98
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	22.67	18.25
EER87757	Sorghum	mitochondrion	24.67	17.43
OQU82754	Sorghum	plastid	26.67	16.88
CDY37137	Canola	plastid	34.89	16.46
GSMUA_Achr11P...	Banana	cytosol	32.0	13.07

Protein Annotations

EnsemblPlants:EES16518	EnsemblPlantsGene:SORBI_3008G012700	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF133	PFAM:PF03514	PFscan:PS50985	ProteinID:EES16518	ProteinID:EES16518.2	UniParc:UPI00081AE06C
UniProt:C5YQI6	MapMan:15.5.12	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:1085858..1088155

Molecular Weight (calculated)

50342.6 Da

IEP (calculated)

7.206

GRAVY (calculated)

-0.126

Length

450 amino acids

Sequence
(BLAST)

001: MMCMPSVRDQ VRLVPALYQC ATHVSEGSIG KTNDSLSEIK RLSSIVDGPL QRLSQIMADS LARRLLFSCE GLTGSLIHPS DYFEQSSIQS ARYNFASLSP
101: YLNTGFATIN RAILEAMEVE KVVRIIDLSC SASHPRQWLK LLHGFHGRPG GPPEVRLTVV HDDNDFLANM RALLSKEADM LKIPFQFNDV NGRLETLDFS
201: NLRSVLGIKY GEAIAISCSL QLHRLLVVDD NASCSAIDQL QKMANAAQLK QMASSVYSPA SILNYPRTPS PLLLASFLNA IHTLKPNIML VMEQDANHNA
301: LLFSDRFVEA LNYYAALFDS FNAMAATNSQ RANERAQVER MILGEEIKNI LLCEGVNRHE RHETLSQWAM YMDTSGFHHV PLSFGAIREG ELKLMSFGLN
401: GCQYQVESDC LLLGWSSTRL YSISAWRPKK GSTSGSREHM LVQRQVWPHN

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.